Browse Element(s) Details


Os.24977.1.A1_at

Description gb:CA763220
DB_XREF= gi:25807259
DB_XREF=BR060009B10H09.ab1
CLONE=BR060009B10H09.ab1
TID=Os.24977.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g067307/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06690OsAffx.24927.2.S1_x_at11/111+3153981..3155789hypothetical protein
LOC_Os01g06690OsAffx.24927.1.S1_x_at7/111+3153981..3155789hypothetical protein
LOC_Os01g06700OsAffx.30352.2.S1_at11/111+3158122..3164468retrotransposon protein, putative, unclassified
LOC_Os01g06710OsAffx.30352.3.S1_at11/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.18947.1.S1_at2/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.39421.1.S1_at2/111+3164802..3168215hypothetical protein
LOC_Os01g06710OsAffx.30352.1.S1_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.27342.1.S2_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06710OsAffx.20967.1.S1_x_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06720OsAffx.23138.1.S1_at10/111+3173346..3176404Leucine Rich Repeat family protein
LOC_Os01g06730Os.24977.1.A1_at7/111+3178941..3182009Leucine Rich Repeat family protein
LOC_Os01g06740Os.11371.1.S1_at11/111+3185839..3187132Ribosome inactivating protein, expressed
LOC_Os01g06740Os.1665.2.S1_x_at1/111+3185839..3187132Ribosome inactivating protein, expressed
LOC_Os01g06750OsAffx.22944.3.S1_at11/111+3193788..3196812Leucine Rich Repeat family protein
LOC_Os01g06750OsAffx.22944.1.S1_at6/111+3193788..3196812Leucine Rich Repeat family protein
LOC_Os01g06760OsAffx.23139.1.S1_at11/111+3198025..3201054Leucine Rich Repeat family protein
LOC_Os01g06770OsAffx.22848.4.S1_at2/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06770OsAffx.22848.4.S1_x_at1/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06770OsAffx.22848.3.S1_x_at1/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24977.1.A1_at--1012--4931Chr01:3181524..3181548 (25 bp)
GCATTCCATGGAAGCGTCCCTAAAG
LOC_Os01g06730
Os.24977.1.A1_at--530--5411Chr01:3181534..3181558 (25 bp)
GAAGCGTCCCTAAAGCTATTGGAGA
LOC_Os01g06730
Os.24977.1.A1_at--75--6691Chr01:3181611..3181635 (25 bp)
GTTCCAACTCAACTTAGCCATCTAA
LOC_Os01g06730
Os.24977.1.A1_at--665--3271Chr01:3181736..3181760 (25 bp)
CAACAGGCTGGTGGGAAGAATACCA
LOC_Os01g06730
Os.24977.1.A1_at--1004--7471Chr01:3181817..3181841 (25 bp)
GTGTGGCCCTCCATTGTCAAAAGGA
LOC_Os01g06730
Os.24977.1.A1_at--218--2511Chr01:3181848..3181872 (25 bp)
AACATGACGCTGAATGTTACACTTT
LOC_Os01g06730
Os.24977.1.A1_at--951--5631Chr01:3181875..3181899 (25 bp)
GACAGGAAATCTATAGACATTGTGT
LOC_Os01g06730
Os.24977.1.A1_at--927--5191NONE
GAATTATGTACTTTCCCGTACCAAG
NONE
Os.24977.1.A1_at--82--9871NONE
TACTTTCCCGTACCAAGGTCATTTG
NONE
Os.24977.1.A1_at--369--5031Chr01:3182050..3182074 (25 bp)
GCAGTTCGTTTGTAATCAGGACCAT
NONE
Os.24977.1.A1_at--444--7071Chr01:3182061..3182085 (25 bp)
GTAATCAGGACCATGTCATTGTTGT
NONE
Target Sequence 
GCATTCCATGGAAGCGTCCCTAAAGCTATTGGAGAGTTAGTTNTGCTAAACACGCTCAACATGTCACACAACTCATTAAC
NGGGCNGGTTCCAACTCAACTTAGCCATCTAAACCAGATGGAGGCTTTGGACCTGTCCTCNAACGAGCTTTCAGGAGTGA
TTCNACAGGAGCTAGNATCGTTGCATTTCCTCACAACANTGAACCTGTCCTACAACAGGCTGGTGGGAAGAATACCAGAG
TCNACTCAATTCTCAACATTCNNGAACANCTCGTTTNTAGGGAATGANGGTTTGTGTGGCCCTCCATTGTCAAAAGGATG
TGACAACATGACGCTGAATGTTACACTTTNTGACAGGAAATCTATAGACATTGTGTTGTTCCTCTTTTCTGGATTGGGAT
TTGGCCTTGGATNNNNNNTTGCAATTGCAATTGTAATAGCATGGGGAGTTCCCATTAGAAAATGGTNGCTACTAGGGCAG
NGAGTCCCCTGAATTATGTACTTTCCCGTACCAAGGTCATTTGCAGTTCGTTTGTAATCAGGACCATGTCATTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24977.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis