Browse Element(s) Details


Os.1665.2.S1_x_at

Description gb:AK120073.1
DB_XREF= gi:37989696
TID=Os.1665.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein synthesis inhibitor II (ribosome-inactivating protein II) (rRNA N-glycosidase) (P0701D05.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013006P20, full insert sequence.
FL= gb:AK120073.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0730011/11expressed protein
LOC_Os01g067401/11Ribosome inactivating protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07250Os.37707.2.S1_x_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07250Os.37707.1.S1_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07260Os.18583.2.S1_x_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.2.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.1.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07270OsAffx.22756.2.S1_x_at2/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07270OsAffx.25729.2.S1_x_at1/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07280OsAffx.22756.3.S1_at10/111+3428408..3432420Leucine Rich Repeat family protein, expressed
LOC_Os01g07289NANA1+3433444..3434022NA
LOC_Os01g07300Os.1665.1.S1_a_at11/111+3441961..3443395expressed protein
LOC_Os01g07300Os.1665.2.S1_x_at11/111+3441961..3443395expressed protein
LOC_Os01g07310Os.9898.1.S1_at11/111+3443739..3446984integral membrane protein, putative, expressed
LOC_Os01g07320OsAffx.10952.2.S1_s_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.2.S1_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.1.S1_at1/111+3452056..3452861hypothetical protein
LOC_Os01g07330Os.34951.1.S1_at11/111+3453671..3461754expressed protein
LOC_Os01g07330Os.34951.2.S1_x_at4/111+3453671..3461754expressed protein
LOC_Os01g07340Os.34951.2.S1_at9/111+3462436..3464322expressed protein
LOC_Os01g07340Os.34951.2.S1_x_at6/111+3462436..3464322expressed protein
LOC_Os01g07350Os.23703.2.S1_x_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.2.S1_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.1.A1_at10/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1665.2.S1_x_at--1080--3832Chr12:21167414..21167436 (23 bp)
CTGCTCCTGATGGTGCACGAGGCGA
NONE
Os.1665.2.S1_x_at--1126--4071Chr01:3442763..3442787 (25 bp)
CGACGCGGTTCCAGACCGTGTCGAG
LOC_Os01g07300
Os.1665.2.S1_x_at--737--9611Chr01:3442802..3442826 (25 bp)
TCATGCACCCCAAGGCGGCGAGCAA
LOC_Os01g07300
Os.1665.2.S1_x_at--545--9511Chr01:3442880..3442904 (25 bp)
TCTCGGCGGCCATGCTCGGCACGGA
LOC_Os01g07300
Os.1665.2.S1_x_at--602--7652Chr01:3442981..3443005 (25 bp)
GGGATCCTGCTGTTCGTCGAGGTCC
LOC_Os01g07300
Os.1665.2.S1_x_at--218--1091Chr01:3443026..3443050 (25 bp)
AGGGCGCTCCAGCTGTTCCACCATG
LOC_Os01g07300
Os.1665.2.S1_x_at--169--9231Chr01:3443042..3443066 (25 bp)
TCCACCATGGGAACTAGATTTTGAT
LOC_Os01g07300
Os.1665.2.S1_x_at--741--2531Chr01:3443053..3443077 (25 bp)
AACTAGATTTTGATGCAGCTGGATT
LOC_Os01g07300
Os.1665.2.S1_x_at--341--10371Chr01:3443077..3443101 (25 bp)
TTTTTTCTCCTTGTTTGAGCCAATA
LOC_Os01g07300
Os.1665.2.S1_x_at--856--7391Chr01:3443115..3443139 (25 bp)
GTGATGGTTTTGCTATTTGATTTGA
LOC_Os01g07300
Os.1665.2.S1_x_at--113--9651Chr01:3443177..3443201 (25 bp)
TCAGCACCATAGTTTTATCTATAGC
LOC_Os01g07300
Target Sequence 
CTGCTCCTGATGGTGCACGAGGCGACGCGGTTCCAGACCGTGTCGAGGCTGGTCGCCGGGCTCATGCACCCCAAGGCGGC
GAGCAAGAGCGGCGCCATCACCACCGCGATGAGGAAGCAGGTGAACGGGTGGCAGGTCCTCTCGGCGGCCATGCTCGGCA
CGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCTGAGGGACATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTG
GGGATCCTGCTGTTCGTCGAGGTCCCCGGCGGGATGACGGCGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAACTAGAT
TTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAATAAAATGTTAGATTTGTGATGGTTTTGCTATTTGATTTGAG
TAGAAATGTTAGATTTTGTGTGTATTCGGAATAAATTCAGCACCATAGTTTTATCTATAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1665.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis