Browse Element(s) Details


Os.23703.2.S1_x_at

Description gb:NM_184529.1
DB_XREF= gi:34896147
GEN=P0701D05.29
TID=Os.23703.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23703 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0701D05.29 (P0701D05.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0701D05.29 (P0701D05.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0735011/11calcineurin-like phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07300Os.1665.1.S1_a_at11/111+3441961..3443395expressed protein
LOC_Os01g07300Os.1665.2.S1_x_at11/111+3441961..3443395expressed protein
LOC_Os01g07310Os.9898.1.S1_at11/111+3443739..3446984integral membrane protein, putative, expressed
LOC_Os01g07320OsAffx.10952.2.S1_s_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.2.S1_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.1.S1_at1/111+3452056..3452861hypothetical protein
LOC_Os01g07330Os.34951.1.S1_at11/111+3453671..3461754expressed protein
LOC_Os01g07330Os.34951.2.S1_x_at4/111+3453671..3461754expressed protein
LOC_Os01g07340Os.34951.2.S1_at9/111+3462436..3464322expressed protein
LOC_Os01g07340Os.34951.2.S1_x_at6/111+3462436..3464322expressed protein
LOC_Os01g07350Os.23703.2.S1_x_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.2.S1_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.1.A1_at10/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07360Os.34142.1.S1_at11/111+3470648..3474136CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07364Os.50345.1.S1_at11/111+3475339..3475780expressed protein
LOC_Os01g07370Os.37822.3.A1_s_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07370Os.37822.1.A1_a_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07376Os.16494.1.S1_at11/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_x_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07382Os.38232.1.S1_at11/111+3490123..3493361expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23703.2.S1_x_at--756--8171Chr01:3466243..3466267 (25 bp)
GGAAGACCGGCCATATGACCACAGC
LOC_Os01g07350
Os.23703.2.S1_x_at--897--1271Chr01:3466188..3466212 (25 bp)
AGATCAACACGTATTCGCCTGTGCA
LOC_Os01g07350
Os.23703.2.S1_x_at--1038--8991Chr01:3466099..3466123 (25 bp)
TGAAGATCCTTTTCGTGCTTCTCAG
LOC_Os01g07350
Os.23703.2.S1_x_at--170--1091Chr01:3466060..3466083 (24 bp)
AGGGCTCATTTGATCCACTCAGTGA
LOC_Os01g07350
Os.23703.2.S1_x_at--566--2191Chr01:3465669..3465693 (25 bp)
ACAAACTCACTGTCCTTGCGAAGGA
LOC_Os01g07350
Os.23703.2.S1_x_at--229--2291Chr01:3465613..3465637 (25 bp)
AAATGCCGTGCTTTTGTTGACCAAG
LOC_Os01g07350
Os.23703.2.S1_x_at--995--6651Chr01:3465598..3465622 (25 bp)
GTTGACCAAGTCACCAGAACATGTG
LOC_Os01g07350
Os.23703.2.S1_x_at--732--7511Chr01:3465552..3465576 (25 bp)
GTGGATCATCACTTTGCGACATTGT
LOC_Os01g07350
Os.23703.2.S1_x_at--958--31Chr01:3465532..3465556 (25 bp)
ATTGTGGATCTGGTTCCATGCTCAT
LOC_Os01g07350
Os.23703.2.S1_x_at--1116--231Chr01:3465447..3465471 (25 bp)
ATATACATCATTCCATGGCGCCTGA
LOC_Os01g07350
Os.23703.2.S1_x_at--381--931Chr01:3465420..3465444 (25 bp)
AGGAAACTGAGTCTGGCCTCGGTTC
LOC_Os01g07350
Target Sequence 
GGAAGACCGGCCATATGACCACAGCAGTTATATGGATTATTTGCGGTGGTACAGAAGATCAACACGTATTCGCCTGTGCA
CACCGAAGAGGATAAGTAATGGTCACAAGGGTGGGGCATCTGGTGGGAGTGCAATTTCTGATTCTGAAGATCCTTTTCGT
GCTTCTCAGCTTCGTTACACCCCCAGGGCTCATTTGATCCACTCAGTGACCGACAAACTCACTGTCCTTGCGAAGGAGGC
AGCTTCTCAAAAAAGTTGCTCTAGAGGCAAATGCCGTGCTTTTGTTGACCAAGTCACCAGAACATGTGTAGAAGTTATTG
GGGAACTTGGTGGATCATCACTTTGCGACATTGTGGATCTGGTTCCATGCTCATCGACTGCTGCAACAACTGCAGCTGAA
CCAGAGGCAGAGCAACAGAGGGATAAAGAGGAAGATATACATCATTCCATGGCGCCTGATCAGGAAACTGAGTCTGGCCT
CGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23703.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis