Browse Element(s) Details


OsAffx.11853.1.S1_x_at

Description tigr:9629.m07444
TID=OsAffx.11853.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Thioredoxin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g073769/11Thioredoxin H-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07330Os.34951.1.S1_at11/111+3453671..3461754expressed protein
LOC_Os01g07330Os.34951.2.S1_x_at4/111+3453671..3461754expressed protein
LOC_Os01g07340Os.34951.2.S1_at9/111+3462436..3464322expressed protein
LOC_Os01g07340Os.34951.2.S1_x_at6/111+3462436..3464322expressed protein
LOC_Os01g07350Os.23703.2.S1_x_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.2.S1_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.1.A1_at10/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07360Os.34142.1.S1_at11/111+3470648..3474136CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07364Os.50345.1.S1_at11/111+3475339..3475780expressed protein
LOC_Os01g07370Os.37822.3.A1_s_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07370Os.37822.1.A1_a_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07376Os.16494.1.S1_at11/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_x_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07382Os.38232.1.S1_at11/111+3490123..3493361expressed protein
LOC_Os01g07390Os.46325.1.A1_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07390OsAffx.10539.1.S1_x_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07400Os.10353.1.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07400Os.10353.2.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_x_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_s_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410Os.17118.1.A1_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07420Os.1678.1.S1_at10/111+3513526..3515887hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005829cellular_componentcytosol
GO:0005489molecular_functionelectron transporter activity
GO:0005515molecular_functionprotein binding
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11853.1.S1_x_at--1109--1211NONE
AGTTGAATTCTGGAGCAACTTCCCC
NONE
OsAffx.11853.1.S1_x_at--1098--2411Chr01:3488720..3488744 (25 bp)
AAAACTCTTGCCAGTTCGCGCGGCT
LOC_Os01g07376
OsAffx.11853.1.S1_x_at--214--10531Chr01:3488696..3488720 (25 bp)
TTCAGGCTTTCTTTGGCGCCAAATC
LOC_Os01g07376
OsAffx.11853.1.S1_x_at--1041--9311NONE
TCCCAGTTTGGAAGAAGTCGTTGTA
NONE
OsAffx.11853.1.S1_x_at--944--671Chr01:3488386..3488410 (25 bp)
ATGACTATGATTCTGTACCCTGTAG
LOC_Os01g07376
OsAffx.11853.1.S1_x_at--37--3891Chr01:3488243..3488398 (25 bp)
CTGTACCCTGTAGATGTTTGGAAGT
LOC_Os01g07376
OsAffx.11853.1.S1_x_at--1027--591Chr01:3486861..3486885 (25 bp)
ATGCCGTGTCATTGCACCTGTATAT
LOC_Os01g07376
OsAffx.11853.1.S1_x_at--1161--4191Chr01:3486815..3486839 (25 bp)
CCCCAGTTCATGTTCTTGACTATAG
LOC_Os01g07376
OsAffx.11853.1.S1_x_at--798--6751Chr01:3486661..3486804 (25 bp)
GTTAATGGACTTCAGCTCATCATGG
LOC_Os01g07376
OsAffx.11853.1.S1_x_at--476--9611Chr01:3486645..3486669 (25 bp)
TCATCATGGGACATCCGAGCGACAC
LOC_Os01g07376
OsAffx.11853.1.S1_x_at--427--1051Chr01:3486590..3486614 (25 bp)
AGGTGGACAAGCTCGTCGGCGCCAA
LOC_Os01g07376
Target Sequence 
AGTTGAATTCTGGAGCAACTTCCCCCAAAACTCTTGCCAGTTCGCGCGGCTTCAGGCTTTCTTTGGCGCCAAATCCGCCG
CCCAATCCCAGTTTGGAAGAAGTCGTTGTATTGAAGATGGATGTGGATATGAAAGAAAAGAACAGGTGAAATGGGGTGAT
GACTATGATTCTGTACCCTGTAGATGTTTGGAAGTTGTATCATGGGTTGATGATAAGATGGAACGCAGTGATGAAGAAGA
CAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGACCACAAAATTGCAGAGGCAAACA
AGGATGGGAAAATTGTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCACCTGTATATGCTGAG
ATGTCACAGACATACCCCCAGTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGGACTTCAGCTCATCATGGGACAT
CCGAGCGACACCGACGTTCTTCTTCCTAAAGAACGGGGAGCAGGTGGACAAGCTCGTCGGCGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11853.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis