Browse Element(s) Details


OsAffx.22754.1.S1_s_at

Description gb:NM_184538.1
DB_XREF= gi:34896165
GEN=P0028E10.21
TID=OsAffx.22754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 1, F16A14.24 (P0028E10.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0741011/11Axi 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07376Os.16494.1.S1_at11/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_x_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07382Os.38232.1.S1_at11/111+3490123..3493361expressed protein
LOC_Os01g07390Os.46325.1.A1_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07390OsAffx.10539.1.S1_x_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07400Os.10353.1.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07400Os.10353.2.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_x_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_s_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410Os.17118.1.A1_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07420Os.1678.1.S1_at10/111+3513526..3515887hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g07430OsAffx.23147.1.S1_at11/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07430Os.57514.1.S1_x_at1/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07439NANA1+3525868..3526633NA
LOC_Os01g07450OsAffx.19945.1.S1_at11/111+3529661..3530551Myb-like DNA-binding domain containing protein
LOC_Os01g07460OsAffx.23148.1.S1_at11/111+3532885..3533269hypothetical protein
LOC_Os01g07470OsAffx.17666.1.S1_at1/111+3537643..3538074hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22754.1.S1_s_at--205--3511Chr01:3512022..3512046 (25 bp)
CATGGGTCAGCCGACAGAAAGAAAG
LOC_Os01g07410
OsAffx.22754.1.S1_s_at--188--5031Chr01:3512489..3512513 (25 bp)
GCAGTGTAACACTCTTGACTCTGAT
LOC_Os01g07410
OsAffx.22754.1.S1_s_at--275--7451Chr01:3512492..3512516 (25 bp)
GTGTAACACTCTTGACTCTGATCAT
LOC_Os01g07410
OsAffx.22754.1.S1_s_at--611--7051Chr01:3512494..3512518 (25 bp)
GTAACACTCTTGACTCTGATCATAC
LOC_Os01g07410
OsAffx.22754.1.S1_s_at--209--2191Chr01:3512497..3512521 (25 bp)
ACACTCTTGACTCTGATCATACTGA
LOC_Os01g07410
OsAffx.22754.1.S1_s_at--1131--3751Chr01:3512500..3512524 (25 bp)
CTCTTGACTCTGATCATACTGATGT
LOC_Os01g07410
OsAffx.22754.1.S1_s_at--516--5711Chr01:3512505..3512529 (25 bp)
GACTCTGATCATACTGATGTAGAAG
LOC_Os01g07410
OsAffx.22754.1.S1_s_at--435--6271Chr01:3512520..3512544 (25 bp)
GATGTAGAAGTTCAGTGTCCTCATA
LOC_Os01g07410
OsAffx.22754.1.S1_s_at--1015--6931Chr01:3512523..3512547 (25 bp)
GTAGAAGTTCAGTGTCCTCATAGTG
LOC_Os01g07410
OsAffx.22754.1.S1_s_at--209--2831Chr01:3512527..3512551 (25 bp)
AAGTTCAGTGTCCTCATAGTGTTCC
LOC_Os01g07410
OsAffx.22754.1.S1_s_at--511--6751Chr01:3512529..3512553 (25 bp)
GTTCAGTGTCCTCATAGTGTTCCCC
LOC_Os01g07410
Target Sequence 
CATGGGTCAGCCGACAGAAAGAAAGGGGCAGTGTAACACTCTTGACTCTGATCATACTGATGTAGAAGTTCAGTGTCCTC
ATAGTGTTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22754.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis