Browse Element(s) Details


OsAffx.19945.1.S1_at

Description tigr:9629.m00677
TID=OsAffx.19945.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0745011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07400Os.10353.1.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07400Os.10353.2.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_x_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_s_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410Os.17118.1.A1_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07420Os.1678.1.S1_at10/111+3513526..3515887hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g07430OsAffx.23147.1.S1_at11/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07430Os.57514.1.S1_x_at1/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07439NANA1+3525868..3526633NA
LOC_Os01g07450OsAffx.19945.1.S1_at11/111+3529661..3530551Myb-like DNA-binding domain containing protein
LOC_Os01g07460OsAffx.23148.1.S1_at11/111+3532885..3533269hypothetical protein
LOC_Os01g07470OsAffx.17666.1.S1_at1/111+3537643..3538074hypothetical protein
LOC_Os01g07480Os.18280.1.S1_at11/111+3547853..3549948expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0010119biological_processregulation of stomatal movement
GO:0010214biological_processseed coat development
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19945.1.S1_at--614--6171Chr01:3529904..3529928 (25 bp)
GAGGAGGAGCTCATCTTGGCTCTCC
LOC_Os01g07450
OsAffx.19945.1.S1_at--770--5611Chr01:3529931..3530063 (25 bp)
GACAAGCTCGGCAACAGCTGGTCAC
LOC_Os01g07450
OsAffx.19945.1.S1_at--198--2493Chr12:4263797..4263819 (23 bp)
AACAGCTGGTCACAGATCGCGGCGA
NONE
OsAffx.19945.1.S1_at--264--2753Chr01:3530105..3530129 (25 bp)
AAGAACTTCTGGAACGCGCGGCTGC
LOC_Os01g07450
OsAffx.19945.1.S1_at--653--2691Chr01:3530135..3530159 (25 bp)
AAGCTCCGGCAGACGGAGTCGTCGT
LOC_Os01g07450
OsAffx.19945.1.S1_at--928--4491Chr01:3530312..3530336 (25 bp)
GCCGTCGAAGCACCCGCAGCGATGA
LOC_Os01g07450
OsAffx.19945.1.S1_at--693--4111Chr01:3530317..3530341 (25 bp)
CGAAGCACCCGCAGCGATGACGACG
LOC_Os01g07450
OsAffx.19945.1.S1_at--1018--3973Chr01:3530362..3530386 (25 bp)
CGGTGTTCTCGTGGACAACAGTGGT
LOC_Os01g07450
OsAffx.19945.1.S1_at--382--3993Chr01:3530371..3530395 (25 bp)
CGTGGACAACAGTGGTGGTCACCGT
LOC_Os01g07450
OsAffx.19945.1.S1_at--680--3271Chr01:3530377..3530401 (25 bp)
CAACAGTGGTGGTCACCGTGATGCG
LOC_Os01g07450
OsAffx.19945.1.S1_at--301--1951Chr01:3530496..3530520 (25 bp)
ACGGCGACGGATTCAGCTTCTTGGG
LOC_Os01g07450
Target Sequence 
GAGGAGGAGCTCATCTTGGCTCTCCATGACAAGCTCGGCAACAGCTGGTCACAGATCGCGGCGAGGCTGCCGGGGAGGTC
GGACAACGAGATCAAGAACTTCTGGAACGCGCGGCTGCGCAAGAAGCTCCGGCAGACGGAGTCGTCGTCGTCGGCGACGA
CGGCGGCGGGGGCGGCGGCGACCGGACACCGCCGCGGCGAGGCTGACCGGAGTCGACCGCCGCCGCCTGCATCGTTCAAC
ACCTTCTCTCACGACGACCGGACGACTCCTGCTCCTGCCGCCCACATTGCCGCCGCCGCCGCCGTCGAAGCACCCGCAGC
GATGACGACGACGGGCGGCGCCGTCGGCGGCGGTGTTCTCGTGGACAACAGTGGTGGTCACCGTGATGCGGTGGCGGAGG
CGGCGCGGGGACACGTCGGCAGCGGCGACGACGATGGCTTCTTGGCCGTGCTGCTTGGGGAGTACTACCTCGACGCCGGC
GGCCACGGCGACGGATTCAGCTTCTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis