Browse Element(s) Details


Os.18280.1.S1_at

Description gb:AK105527.1
DB_XREF= gi:32990736
TID=Os.18280.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18280 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C98868(E3203),C98869(E3203)~similar to Arabidopsis thaliana chromosome 5, MDC12.5~unknown protein (P0028E10.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G05, full insert sequence.
FL= gb:AK105527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0748011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07439NANA1+3525868..3526633NA
LOC_Os01g07450OsAffx.19945.1.S1_at11/111+3529661..3530551Myb-like DNA-binding domain containing protein
LOC_Os01g07460OsAffx.23148.1.S1_at11/111+3532885..3533269hypothetical protein
LOC_Os01g07470OsAffx.17666.1.S1_at1/111+3537643..3538074hypothetical protein
LOC_Os01g07480Os.18280.1.S1_at11/111+3547853..3549948expressed protein
LOC_Os01g07490Os.18584.1.S1_at11/111+3556534..3571082RST1, putative, expressed
LOC_Os01g07500Os.37066.1.S1_at11/111+3574275..3578661Allinase, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010199biological_processorgan boundary specification
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18280.1.S1_at--64--10471Chr01:3548318..3548342 (25 bp)
TTACGCTTCCGTGGCTAATTGGACA
LOC_Os01g07480
Os.18280.1.S1_at--570--10511Chr01:3548300..3548324 (25 bp)
TTGGACAGTGAACGCCATTAGCACC
LOC_Os01g07480
Os.18280.1.S1_at--805--5051Chr01:3548217..3548241 (25 bp)
GCAGCATGTGAATTGAAGCGCGGCA
LOC_Os01g07480
Os.18280.1.S1_at--140--1291Chr01:3548077..3548101 (25 bp)
AGATCTGCGCTTTGGCCTTGATGAG
LOC_Os01g07480
Os.18280.1.S1_at--1002--9611Chr01:3548035..3548059 (25 bp)
TCAGGAAGATGGCAGCCCATTCATC
LOC_Os01g07480
Os.18280.1.S1_at--1011--4531Chr01:3548021..3548045 (25 bp)
GCCCATTCATCCCAGGTTAATTAAG
LOC_Os01g07480
Os.18280.1.S1_at--973--3111Chr01:3547952..3547976 (25 bp)
AATTATATATATCATCTCCCCGTCC
LOC_Os01g07480
Os.18280.1.S1_at--1134--4231Chr01:3547933..3547957 (25 bp)
CCGTCCCTTTTTGCATGTTGTGCAA
LOC_Os01g07480
Os.18280.1.S1_at--28--7351Chr01:3547914..3547938 (25 bp)
GTGCAAAACCATACTTTGGAGTTCT
LOC_Os01g07480
Os.18280.1.S1_at--1081--1271Chr01:3547873..3547897 (25 bp)
AGATCTTGATCTCTCGTCTTTTCAT
LOC_Os01g07480
Os.18280.1.S1_at--399--7151Chr01:3547858..3547882 (25 bp)
GTCTTTTCATGATTAATTCGCGTTT
LOC_Os01g07480
Target Sequence 
TTACGCTTCCGTGGCTAATTGGACAGTGAACGCCATTAGCACCACCACCACCAACTCAGGATCAGAGAGCATTGGGATGG
ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAATGTGGAGATCTGCGCTTTGGCCTTGATGA
GAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGTTAATTAAGAGTTAAGAAGCAACCTATCTATC
TATCTATATATAGCCAGCATGAATTATATATATCATCTCCCCGTCCCTTTTTGCATGTTGTGCAAAACCATACTTTGGAG
TTCTATATGTAATCGAATCGAGATCTTGATCTCTCGTCTTTTCATGATTAATTCGCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis