Browse Element(s) Details


Os.18584.1.S1_at

Description gb:AK121259.1
DB_XREF= gi:37990882
TID=Os.18584.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1276_B06.27 (OJ1276_B06.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023103K03, full insert sequence.
FL= gb:AK120051.1 gb:AK121259.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0749011/11RST1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07460OsAffx.23148.1.S1_at11/111+3532885..3533269hypothetical protein
LOC_Os01g07470OsAffx.17666.1.S1_at1/111+3537643..3538074hypothetical protein
LOC_Os01g07480Os.18280.1.S1_at11/111+3547853..3549948expressed protein
LOC_Os01g07490Os.18584.1.S1_at11/111+3556534..3571082RST1, putative, expressed
LOC_Os01g07500Os.37066.1.S1_at11/111+3574275..3578661Allinase, C-terminal domain containing protein, expressed
LOC_Os01g07510OsAffx.1955.1.S1_at11/111+3584410..3584640hypothetical protein
LOC_Os01g07510OsAffx.1955.1.S1_x_at11/111+3584410..3584640hypothetical protein
LOC_Os01g07520Os.9383.1.S1_a_at11/111+3588629..3592954expressed protein
LOC_Os01g07520Os.9383.2.S1_x_at11/111+3588629..3592954expressed protein
LOC_Os01g07530Os.6418.1.S1_at11/111+3595253..3598662Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006723biological_processcuticle hydrocarbon biosynthesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18584.1.S1_at--543--4871Chr01:3557061..3557085 (25 bp)
GCTATGTGGTAGCTGCTGCATCTAT
LOC_Os01g07490
Os.18584.1.S1_at--761--4971Chr01:3557044..3557068 (25 bp)
GCATCTATATGCCACTTCTCATTGT
LOC_Os01g07490
Os.18584.1.S1_at--326--10631Chr01:3556977..3557001 (25 bp)
TTCGTTTCTCTCTAGCAGCATTTGG
LOC_Os01g07490
Os.18584.1.S1_at--438--5051Chr01:3556963..3556987 (25 bp)
GCAGCATTTGGGATGACCTCCGGAA
LOC_Os01g07490
Os.18584.1.S1_at--654--1751Chr01:3556948..3556972 (25 bp)
ACCTCCGGAACTCTGTTGCTGATAA
LOC_Os01g07490
Os.18584.1.S1_at--42--2831Chr01:3556925..3556949 (25 bp)
AAGTTATGGTTGTTGACCGCTCGCA
LOC_Os01g07490
Os.18584.1.S1_at--7--4811Chr01:3556907..3556931 (25 bp)
GCTCGCATCTACACTTGGGCAGAAC
LOC_Os01g07490
Os.18584.1.S1_at--1150--2471Chr01:3556885..3556909 (25 bp)
AACAGCTGACTCATAGTGTCGGCCT
LOC_Os01g07490
Os.18584.1.S1_at--1103--10551Chr01:3556813..3556837 (25 bp)
TTCTTGCCAATATTCTGCGCTGTAC
LOC_Os01g07490
Os.18584.1.S1_at--603--10791Chr01:3556648..3556672 (25 bp)
TTGTTCCCCACCGATGATGTAGCAC
LOC_Os01g07490
Os.18584.1.S1_at--874--6951Chr01:3556630..3556654 (25 bp)
GTAGCACCGCTTTATTTCTGTACAT
LOC_Os01g07490
Target Sequence 
GCTATGTGGTAGCTGCTGCATCTATATGCCACTTCTCATTGTTAACCCAACAAATGTACTGAGTGACTTGCCTGTCACCC
TTCCTTCGTTTCTCTCTAGCAGCATTTGGGATGACCTCCGGAACTCTGTTGCTGATAAGTTATGGTTGTTGACCGCTCGC
ATCTACACTTGGGCAGAACAGCTGACTCATAGTGTCGGCCTCGCACGCCATGACCATATTCATGGAAGTGAAGCTGAAAT
GGCTATTTTTCTTGCCAATATTCTGCGCTGTACTTGCATTGCAGTGGAAGATCACTTGGCTGTTGAAAAGAAGCTAAAAC
TTGCAAACCTGGAGGCTCTATGATCCAAGGGAGAAGTGTTTTCATTTTTATCTTATCTATTCTGTATCATATATATGTTT
AAACTCGTTCTTCTTGTTCCCCACCGATGATGTAGCACCGCTTTATTTCTGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis