Browse Element(s) Details


Os.9383.1.S1_a_at

Description gb:AK121293.1
DB_XREF= gi:37990916
TID=Os.9383.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.9383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1276_B06.30 (OJ1276_B06.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110A06, full insert sequence.
FL= gb:AK121293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0752011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07490Os.18584.1.S1_at11/111+3556534..3571082RST1, putative, expressed
LOC_Os01g07500Os.37066.1.S1_at11/111+3574275..3578661Allinase, C-terminal domain containing protein, expressed
LOC_Os01g07510OsAffx.1955.1.S1_at11/111+3584410..3584640hypothetical protein
LOC_Os01g07510OsAffx.1955.1.S1_x_at11/111+3584410..3584640hypothetical protein
LOC_Os01g07520Os.9383.1.S1_a_at11/111+3588629..3592954expressed protein
LOC_Os01g07520Os.9383.2.S1_x_at11/111+3588629..3592954expressed protein
LOC_Os01g07530Os.6418.1.S1_at11/111+3595253..3598662Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os01g07540OsAffx.1956.1.S1_at11/111+3606522..3610484D111/G-patch domain-containing protein, putative
LOC_Os01g07550NANA1+3613300..3616018hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9383.1.S1_a_at--966--311Chr01:3589185..3589209 (25 bp)
ATACTACCACAAGCAGTGCCTATCA
LOC_Os01g07520
Os.9383.1.S1_a_at--1096--3291Chr01:3589178..3589202 (25 bp)
CACAAGCAGTGCCTATCAATTCCAG
LOC_Os01g07520
Os.9383.1.S1_a_at--753--3691Chr01:3589166..3589190 (25 bp)
CTATCAATTCCAGCCCAAGTGGTTC
LOC_Os01g07520
Os.9383.1.S1_a_at--739--5311Chr01:3589105..3589129 (25 bp)
GAAGGTTGCAACAATGGGATTCTCA
LOC_Os01g07520
Os.9383.1.S1_a_at--215--5151Chr01:3589098..3589122 (25 bp)
GCAACAATGGGATTCTCAAGAGAGC
LOC_Os01g07520
Os.9383.1.S1_a_at--444--3231Chr01:3589082..3589106 (25 bp)
CAAGAGAGCAAGTGAGGGCAACTGT
LOC_Os01g07520
Os.9383.1.S1_a_at--864--3251Chr01:3589064..3589088 (25 bp)
CAACTGTGCGGAGGCTGACCGAGAA
LOC_Os01g07520
Os.9383.1.S1_a_at--812--791Chr01:3589040..3589064 (25 bp)
ATGGGCAGAATGTGGATCTGAACGT
LOC_Os01g07520
Os.9383.1.S1_a_at--253--5452Chr02:30570551..30570607 (25 bp)
GAACGACAGCGATGTACAGCAGCCC
NONE
Os.9383.1.S1_a_at--100--1651Chr01:3588990..3589014 (25 bp)
AGCGATGTACAGCAGCCCCAGAAAG
LOC_Os01g07520
Os.9383.1.S1_a_at--783--4511Chr01:3588976..3589000 (25 bp)
GCCCCAGAAAGGATGGTTCGGTCGA
LOC_Os01g07520
Target Sequence 
ATACTACCACAAGCAGTGCCTATCAATTCCAGCCCAAGTGGTTCCTCTGGCAACAGGGTGCCGGTTGATGATGTAGTTGA
GAAGGTTGCAACAATGGGATTCTCAAGAGAGCAAGTGAGGGCAACTGTGCGGAGGCTGACCGAGAATGGGCAGAATGTGG
ATCTGAACGTGGTGCTCGACAAGCTGATGAACGACAGCGATGTACAGCAGCCCCAGAAAGGATGGTTCGGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9383.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis