Browse Element(s) Details


OsAffx.1956.1.S1_at

Description tigr:9629.m00686
TID=OsAffx.1956.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0754011/11D111/G-patch domain-containing protein, putative
LOC_Os10g224401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07510OsAffx.1955.1.S1_at11/111+3584410..3584640hypothetical protein
LOC_Os01g07510OsAffx.1955.1.S1_x_at11/111+3584410..3584640hypothetical protein
LOC_Os01g07520Os.9383.1.S1_a_at11/111+3588629..3592954expressed protein
LOC_Os01g07520Os.9383.2.S1_x_at11/111+3588629..3592954expressed protein
LOC_Os01g07530Os.6418.1.S1_at11/111+3595253..3598662Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os01g07540OsAffx.1956.1.S1_at11/111+3606522..3610484D111/G-patch domain-containing protein, putative
LOC_Os01g07550NANA1+3613300..3616018hypothetical protein
LOC_Os01g07560OsAffx.23150.1.S1_at11/111+3618325..3622155Leucine Rich Repeat family protein, expressed
LOC_Os01g07560Os.16980.1.S1_s_at11/111+3618325..3622155Leucine Rich Repeat family protein, expressed
LOC_Os01g07570Os.20276.1.S1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570Os.23670.1.A1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570OsAffx.661.1.S1_x_at1/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1956.1.S1_at--987--7671Chr01:3608947..3608971 (25 bp)
GGGTTTTCCCAACATATATGCCAAT
LOC_Os01g07540
OsAffx.1956.1.S1_at--212--10192Chr01:3608961..3608985 (25 bp)
TATATGCCAATTCCGACAATGATTT
LOC_Os01g07540
OsAffx.1956.1.S1_at--288--351Chr01:3608988..3609012 (25 bp)
ATAAACAGTCATCAGCACAGTGCCA
LOC_Os01g07540
OsAffx.1956.1.S1_at--802--1491Chr01:3609001..3609025 (25 bp)
AGCACAGTGCCAATCGGAAGTCATG
LOC_Os01g07540
OsAffx.1956.1.S1_at--409--10311Chr01:3609048..3609068 (21 bp)
TTTCAGCTGCTAGTGCCAAGGAGCA
LOC_Os01g07540
OsAffx.1956.1.S1_at--897--631Chr01:3609284..3609308 (25 bp)
ATGCTTATAGGGACAGAGCTGCTGA
LOC_Os01g07540
OsAffx.1956.1.S1_at--88--5971Chr01:3609309..3609333 (25 bp)
GAGAAGGATCCTACACCGTGGTATA
LOC_Os01g07540
OsAffx.1956.1.S1_at--875--6951Chr01:3609359..3609383 (25 bp)
GTAGCAGCACCAATTTTTATGAACA
LOC_Os01g07540
OsAffx.1956.1.S1_at--419--1271Chr01:3609429..3609453 (25 bp)
AGATATGAACTTCCGTTCCAGTGGC
LOC_Os01g07540
OsAffx.1956.1.S1_at--913--10831Chr01:3610105..3610349 (25 bp)
TTGTGGCTTGAGGTATGAATTCTTC
LOC_Os01g07540
OsAffx.1956.1.S1_at--558--8251Chr01:3610430..3610454 (25 bp)
GGCAGTAAAGGTTGTGCTTCCTACT
LOC_Os01g07540
Target Sequence 
GGGTTTTCCCAACATATATGCCAATTCCGACAATGATTTGGATAAACAGTCATCAGCACAGTGCCAATCGGAAGTCATGG
ATGTATTTTCTATGAAGGGTGTTTCAGCTGCTAGTGCCAAGGAGCACAAGATAAATGCTTATAGGGACAGAGCTGCTGAG
AGAAGGATCCTACACCGTGGTATAGGGATAGGACCTGGACAGAAACAAAGTAGCAGCACCAATTTTTATGAACATGAGGA
AACAAGTGAGGGCATGGATCTGATGGGAGGTGCATCAGTAGATATGAACTTCCGTTCCAGTGGCTTGAATTCTGCCAAGA
AAATGATGGAGAACATGGGCTGGAAGGAAGTTTTGTGGAACACAAGTAAAACCAATGGGCGAAGCCCTTGGGAAGAGCAC
AAAGGGTACATGTTTTGTGGCTTGAGGTATGAATTCTTCTACAAAAGAAATGATGTAACTGAGACTGTTCATCTCAGAAA
TTCGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACAGGCAGTAAAGGTTGTGCTTCCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis