Browse Element(s) Details


Os.16980.1.S1_s_at

Description gb:BX901257
DB_XREF= gi:40490920
DB_XREF=BX901257
CLONE=p463d02p3
TID=Os.16980.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.16980 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0756011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07530Os.6418.1.S1_at11/111+3595253..3598662Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os01g07540OsAffx.1956.1.S1_at11/111+3606522..3610484D111/G-patch domain-containing protein, putative
LOC_Os01g07550NANA1+3613300..3616018hypothetical protein
LOC_Os01g07560OsAffx.23150.1.S1_at11/111+3618325..3622155Leucine Rich Repeat family protein, expressed
LOC_Os01g07560Os.16980.1.S1_s_at11/111+3618325..3622155Leucine Rich Repeat family protein, expressed
LOC_Os01g07570Os.20276.1.S1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570Os.23670.1.A1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570OsAffx.661.1.S1_x_at1/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07579NANA1+3638973..3639226NA
LOC_Os01g07590Os.15606.1.S1_at11/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07590Os.15606.1.S2_at6/111+3642389..3647164universal stress protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16980.1.S1_s_at--743--3231Chr01:3621782..3621806 (25 bp)
CAACCGGGAGTGTGTAGTGTAAGTC
LOC_Os01g07560
Os.16980.1.S1_s_at--1056--7411Chr01:3621793..3621817 (25 bp)
GTGTAGTGTAAGTCTAATCCAGAAG
LOC_Os01g07560
Os.16980.1.S1_s_at--112--6451Chr01:3621819..3621843 (25 bp)
GATCAGCCAAACAAAGCACTGTGAT
LOC_Os01g07560
Os.16980.1.S1_s_at--372--8951Chr01:3621863..3621887 (25 bp)
TGACTGTGTCGTCGTTGAGCTCACC
LOC_Os01g07560
Os.16980.1.S1_s_at--123--271Chr01:3621981..3622005 (25 bp)
ATATGAGGAAGACGCCACCTTGCAT
LOC_Os01g07560
Os.16980.1.S1_s_at--370--5371Chr01:3621988..3622012 (25 bp)
GAAGACGCCACCTTGCATGAAACAA
LOC_Os01g07560
Os.16980.1.S1_s_at--989--3171Chr01:3622022..3622046 (25 bp)
CAATAATTCCTCCTCGTGTACTGTA
LOC_Os01g07560
Os.16980.1.S1_s_at--126--9431Chr01:3622035..3622059 (25 bp)
TCGTGTACTGTACCATACATAGCAG
LOC_Os01g07560
Os.16980.1.S1_s_at--907--9871Chr01:3622050..3622074 (25 bp)
TACATAGCAGTAGCTGGTGCAATGC
LOC_Os01g07560
Os.16980.1.S1_s_at--700--7771Chr01:3622065..3622089 (25 bp)
GGTGCAATGCATCTGGTATTCTGTT
LOC_Os01g07560
Os.16980.1.S1_s_at--943--6851Chr01:3622090..3622114 (25 bp)
GTATTTATGTATATTAACCCAGGGT
LOC_Os01g07560
Target Sequence 
CAACCGGGAGTGTGTAGTGTAAGTCTAATCCAGAAGNGATCAGCCAAACAAAGCACTGTGATGTCTGTGNCAATGTGATG
GTGACTGTGTCGTCGTTGAGCTCACCTCGGCCGGNCGGCGCTCGCCGCCGGCGACAAGCCGGCGTGGNCAAGCTGGGGTC
GGTGGAGTGGATCGGAGGAGNCAAAGGTGGGGAAGAAGAATATGAGGAAGACGCCACCTTGCATGAAACAANTTAANCAG
CAATAATTCCTCCTCGTGTACTGTACCATACATAGCAGTAGCTGGTGCAATGCATCTGGTATTCTGTTGTATTTATGTAT
ATTAACCCAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16980.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis