Browse Element(s) Details


Os.20276.1.S1_at

Description gb:AK106837.1
DB_XREF= gi:32992046
TID=Os.20276.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-G08, full insert sequence.
FL= gb:AK106837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0757011/11Carboxyl-terminal proteinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07540OsAffx.1956.1.S1_at11/111+3606522..3610484D111/G-patch domain-containing protein, putative
LOC_Os01g07550NANA1+3613300..3616018hypothetical protein
LOC_Os01g07560OsAffx.23150.1.S1_at11/111+3618325..3622155Leucine Rich Repeat family protein, expressed
LOC_Os01g07560Os.16980.1.S1_s_at11/111+3618325..3622155Leucine Rich Repeat family protein, expressed
LOC_Os01g07570Os.20276.1.S1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570Os.23670.1.A1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570OsAffx.661.1.S1_x_at1/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07579NANA1+3638973..3639226NA
LOC_Os01g07590Os.15606.1.S1_at11/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07590Os.15606.1.S2_at6/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07600Os.54010.1.S1_at11/111+3649075..3653252expressed protein
LOC_Os01g07600OsAffx.23151.1.S1_x_at5/111+3649075..3653252expressed protein
LOC_Os01g07610Os.53998.1.S1_at11/111+3658490..3661001pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20276.1.S1_at--600--3711Chr01:3630593..3630617 (25 bp)
CTAGAGCCACCACCCAATTAATTAA
LOC_Os01g07570
Os.20276.1.S1_at--546--6871Chr01:3630528..3630552 (25 bp)
GTATTACTGATCATTACCAACCAAT
LOC_Os01g07570
Os.20276.1.S1_at--1092--1691Chr01:3630513..3630537 (25 bp)
ACCAACCAATTACATGCAACACCAT
LOC_Os01g07570
Os.20276.1.S1_at--515--5151Chr01:3630498..3630522 (25 bp)
GCAACACCATCTCGATCTTATTAAT
LOC_Os01g07570
Os.20276.1.S1_at--119--10511Chr01:3630478..3630502 (25 bp)
TTAATTACTCTACTCGTCACAGAAT
LOC_Os01g07570
Os.20276.1.S1_at--782--6291Chr01:3630321..3630345 (25 bp)
GATGATGAGTGTGTCAAGCAGCCAA
LOC_Os01g07570
Os.20276.1.S1_at--291--10271Chr01:3630272..3630296 (25 bp)
TTTGAGTTGATACGAGGCTTCCTTT
LOC_Os01g07570
Os.20276.1.S1_at--795--7651Chr01:3630160..3630184 (25 bp)
GGGAGTGTTATGATCACCATATGTA
LOC_Os01g07570
Os.20276.1.S1_at--62--10191Chr01:3630133..3630157 (25 bp)
TATAGCGTGGCATCAAGAGTGTTTT
LOC_Os01g07570
Os.20276.1.S1_at--822--1331Chr01:3630118..3630142 (25 bp)
AGAGTGTTTTTTGCCATGCGTTTGA
LOC_Os01g07570
Os.20276.1.S1_at--382--9111Chr01:3630102..3630126 (25 bp)
TGCGTTTGAATTATCGATGCGACCT
LOC_Os01g07570
Target Sequence 
CTAGAGCCACCACCCAATTAATTAAGCCGCCNGAGACGAGGAAGACGACGATGATTATTAAGGGGGTATTACTGATCATT
ACCAACCAATTACATGCAACACCATCTCGATCTTATTAATTACTCTACTCGTCACAGAATATAAGGGATTTTGATCGGAT
TGGATATATCTTAGGTAATTGAAATCCAGTCAAAATATCTTATATTTTAGGATGGANTGAGTAGTTTTCTAAGTAGTAAT
TAATTAGCTAGATAGCTATAGTAGTGGTTNCNTGATGATGAGTGTGTCAAGCAGCCAAGGAAGAGTGATGGNGCCAAAAG
TTTTTGAGTTGATACGAGGCTTCCTTTNGANNTTTTTTNNNCTGNCTTTTTAGGGGGNNGTTNAGCTNAATTTTCTNGNN
NTNTGTTACTTATGTATACATGAAGAAATTGATAGGGGAGTGTTATGATCACCATATGTATATATAGCGTGGCATCAAGA
GTGTTTTTTGCCATGCGTTTGAATTATCGATGCGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis