Browse Element(s) Details


OsAffx.661.1.S1_x_at

Description gb:NM_193794.1
DB_XREF= gi:34914671
GEN=B1075D06.7
TID=OsAffx.661.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1075D06.7 (B1075D06.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g248801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g545501/11F-box domain containing protein
LOC_Os01g408201/11Peptidase family M41 containing protein, expressed
LOC_Os08g371801/11Patatin-like phospholipase family protein, expressed
LOC_Os03g034201/11expressed protein
LOC_Os02g447501/11hypothetical protein
LOC_Os01g075701/11Carboxyl-terminal proteinase, putative, expressed
LOC_Os03g367301/11OST3/OST6 family protein, putative, expressed
LOC_Os01g208601/11Phospholipase D. Active site motif family protein, expressed
LOC_Os03g307001/11retrotransposon protein, putative, unclassified
LOC_Os08g078501/11polI-like DNA polymerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g24840OsAffx.29376.1.S1_x_at1/117+14122097..14125203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24850NANA7+14127885..14131304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24860OsAffx.31892.2.S1_x_at2/117+14134114..14136851retrotransposon, putative, centromere-specific
LOC_Os07g24870NANA7+14141672..14142154hypothetical protein
LOC_Os07g24880OsAffx.661.1.S1_x_at1/117+14146564..14150017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g24890NANA7+14153734..14154396hypothetical protein
LOC_Os07g24900NANA7+14156619..14158660retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24910Os.51869.1.S1_at2/117+14159219..14164496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24920OsAffx.3496.1.S1_x_at3/117+14165693..14166088retrotransposon protein, putative, unclassified
LOC_Os07g24920OsAffx.21269.1.S1_x_at2/117+14165693..14166088retrotransposon protein, putative, unclassified
LOC_Os07g24930NANA7+14174616..14175065retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0006510biological_processATP-dependent proteolysis
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0010205biological_processphotoinhibition
GO:0012501biological_processprogrammed cell death
GO:0005739cellular_componentmitochondrion
GO:0005886cellular_componentplasma membrane
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0003677molecular_functionDNA binding
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0004630molecular_functionphospholipase D activity
GO:0008233molecular_functionpeptidase activity
GO:0008237molecular_functionmetallopeptidase activity
GO:0008270molecular_functionzinc ion binding
GO:0015157molecular_functionoligosaccharide transporter activity
GO:0016887molecular_functionATPase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.661.1.S1_x_at--103--4151Chr01:18548429..18548453 (25 bp)
CGCGCGACATGTGAGCAGCGGATCC
NONE
OsAffx.661.1.S1_x_at--36--492Chr01:18548603..18548627 (25 bp)
ATCTGGAGGTGTGGTGGCATCAGCG
NONE
OsAffx.661.1.S1_x_at--705--4631NONE
GCGTCGGGAATTTCCTTGTTTATAT
NONE
OsAffx.661.1.S1_x_at--937--3611Chr01:18551022..18551046 (25 bp)
CTTGTTTATATAAGGGCTTGTTCAC
NONE
OsAffx.661.1.S1_x_at--93--101725Chr12:25548831..25548851 (21 bp)
TATAAGGGCTTGTTCACTTTGATGC
NONE
OsAffx.661.1.S1_x_at--1016--223135Chr12:25394563..25394582 (20 bp)
AAATCCTGCCAAAATTTTGGGCCAT
NONE
OsAffx.661.1.S1_x_at--584--3131Chr01:18551120..18551619 (25 bp)
AATTTTGGGCCATATGATGGTTGTA
NONE
OsAffx.661.1.S1_x_at--413--7051Chr01:18551626..18551650 (25 bp)
GTAACTGTCGTGGAACCCGATGTAA
NONE
OsAffx.661.1.S1_x_at--336--8511Chr01:18551636..18551660 (25 bp)
TGGAACCCGATGTAACCGTCATTGG
NONE
OsAffx.661.1.S1_x_at--730--6211Chr01:18551699..18551723 (25 bp)
GAGGCGCCGATGTCGATTCGGCCAA
NONE
OsAffx.661.1.S1_x_at--22--1851Chr01:18551705..18551729 (25 bp)
CCGATGTCGATTCGGCCAACCTTGG
NONE
Target Sequence 
CGCGCGACATGTGAGCAGCGGATCCGGCGGCGGCGGCCCCTCCCTCCCCCTCGTTCTCCCTCGGCTGCGGGCGGGGAGAA
GGGCGGCGACAGTGGCGGCGGCAAGTGACCACGACGACGCGCGGCCCCTCCCCTACCTCCCCTTGCGGATTCGGCGGCGG
TGGGACGGAGGCGGATCTGGAGGTGTGGTGGCATCAGCGGCGGCCGGCCGGCGTCGGGAATTTCCTTGTTTATATAAGGG
CTTGTTCACTTTGATGCCATTTTCAACCTTACCAAATTTTGGTAAAGTTACCAAAAAAGTGGCTACATTTAGTTTGCTGC
CAAATTTTGGTAACTATATAAGAAATCCTGCCAAAATTTTGGGCCATATGATGGTTGTAATGGCAGTAACTGTCGTGGAA
CCCGATGTAACCGTCATTGGGGTGCCATCAGGAGCGTATACGTGGAAGCAGATGGCGAGAGGCGCCGATGTCGATTCGGC
CAACCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.661.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis