Browse Element(s) Details


Os.37066.1.S1_at

Description gb:AK061054.1
DB_XREF= gi:32971072
TID=Os.37066.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37066 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative alliinase (OJ1276_B06.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-H01, full insert sequence.
FL= gb:AK061054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0750011/11Allinase, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07480Os.18280.1.S1_at11/111+3547853..3549948expressed protein
LOC_Os01g07490Os.18584.1.S1_at11/111+3556534..3571082RST1, putative, expressed
LOC_Os01g07500Os.37066.1.S1_at11/111+3574275..3578661Allinase, C-terminal domain containing protein, expressed
LOC_Os01g07510OsAffx.1955.1.S1_at11/111+3584410..3584640hypothetical protein
LOC_Os01g07510OsAffx.1955.1.S1_x_at11/111+3584410..3584640hypothetical protein
LOC_Os01g07520Os.9383.1.S1_a_at11/111+3588629..3592954expressed protein
LOC_Os01g07520Os.9383.2.S1_x_at11/111+3588629..3592954expressed protein
LOC_Os01g07530Os.6418.1.S1_at11/111+3595253..3598662Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016846molecular_functioncarbon-sulfur lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37066.1.S1_at--622--8911Chr01:3574831..3574855 (25 bp)
TGAGCATGCTCGACAGGGACGACGC
LOC_Os01g07500
Os.37066.1.S1_at--88--10631Chr01:3574729..3574753 (25 bp)
TTCGTCCGTGCGCTAGCAAGCAAAG
LOC_Os01g07500
Os.37066.1.S1_at--630--5131Chr01:3574710..3574734 (25 bp)
GCAAAGCATGCCCATGACTCATGAG
LOC_Os01g07500
Os.37066.1.S1_at--141--5451Chr01:3574675..3574699 (25 bp)
GAACCGTTAACTGTGTATCTGTATC
LOC_Os01g07500
Os.37066.1.S1_at--821--1371Chr01:3574641..3574665 (25 bp)
AGAGCCTTTTTGGTAGAGCTTCAGA
LOC_Os01g07500
Os.37066.1.S1_at--87--5931Chr01:3574626..3574650 (25 bp)
GAGCTTCAGAGCATAACCAAACGGT
LOC_Os01g07500
Os.37066.1.S1_at--226--2571Chr01:3574607..3574631 (25 bp)
AACGGTTTCAGCTTTACTCGAAATG
LOC_Os01g07500
Os.37066.1.S1_at--145--10731Chr01:3574471..3574495 (25 bp)
TTGAAGTCCTGCCAAATAGGTTCTC
LOC_Os01g07500
Os.37066.1.S1_at--319--1331Chr01:3574424..3574448 (25 bp)
AGAGGAGCTTGCTTTTCTCTAGCTT
LOC_Os01g07500
Os.37066.1.S1_at--854--8451Chr01:3574347..3574371 (25 bp)
TGGCCTGCAATGTAGATCAGTGCCT
LOC_Os01g07500
Os.37066.1.S1_at--347--411Chr01:3574332..3574356 (25 bp)
ATCAGTGCCTGCGTGATTTCACATA
LOC_Os01g07500
Target Sequence 
TGAGCATGCTCGACAGGGACGACGCGTTCGACATCTTCATCAACCGCCTCTCGTCGCTCAAGTGAAAGAAGACGGCGGAG
AGAGAGAGGACGCTGCAGCGTGTTCGTCCGTGCGCTAGCAAGCAAAGCATGCCCATGACTCATGAGAGCATGAGTAGAAC
CGTTAACTGTGTATCTGTATCAGTATTTGGAGAGCCTTTTTGGTAGAGCTTCAGAGCATAACCAAACGGTTTCAGCTTTA
CTCGAAATGGGAGTGAGGTTGATTGAAGTGCTATCACAGAATGATCTAGAGATGTAGAGTTGGATTTAGACTATTTTACA
GCTACACTTTAGAACCAACTCTTGAAGTTAAATTTGTAAGTTGAAGTCCTGCCAAATAGGTTCTCAGTAGTAGTAGTAGG
TAGAAGAAGAGGAGCTTGCTTTTCTCTAGCTTTTCTTTTTCTCTTAAATATTTGTTTCTCGATGTTGTGTTTTATGGTTA
AGAATGGCCTGCAATGTAGATCAGTGCCTGCGTGATTTCACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37066.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis