Browse Element(s) Details


OsAffx.23148.1.S1_at

Description tigr:9629.m00678
TID=OsAffx.23148.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0746011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07410OsAffx.22754.1.S1_x_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_s_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410Os.17118.1.A1_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07420Os.1678.1.S1_at10/111+3513526..3515887hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g07430OsAffx.23147.1.S1_at11/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07430Os.57514.1.S1_x_at1/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07439NANA1+3525868..3526633NA
LOC_Os01g07450OsAffx.19945.1.S1_at11/111+3529661..3530551Myb-like DNA-binding domain containing protein
LOC_Os01g07460OsAffx.23148.1.S1_at11/111+3532885..3533269hypothetical protein
LOC_Os01g07470OsAffx.17666.1.S1_at1/111+3537643..3538074hypothetical protein
LOC_Os01g07480Os.18280.1.S1_at11/111+3547853..3549948expressed protein
LOC_Os01g07490Os.18584.1.S1_at11/111+3556534..3571082RST1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23148.1.S1_at--964--9751Chr01:3532931..3532955 (25 bp)
TAATCACTCTGCTGCTTGTCGTTGT
LOC_Os01g07460
OsAffx.23148.1.S1_at--278--2011Chr01:3532936..3532960 (25 bp)
ACTCTGCTGCTTGTCGTTGTCTCAC
LOC_Os01g07460
OsAffx.23148.1.S1_at--131--10811Chr01:3532946..3532970 (25 bp)
TTGTCGTTGTCTCACGCCCACAATA
LOC_Os01g07460
OsAffx.23148.1.S1_at--113--9671Chr01:3532957..3532981 (25 bp)
TCACGCCCACAATATTCCTTGGATG
LOC_Os01g07460
OsAffx.23148.1.S1_at--923--3111Chr01:3532967..3532991 (25 bp)
AATATTCCTTGGATGCTAGCGCATT
LOC_Os01g07460
OsAffx.23148.1.S1_at--1116--6331Chr01:3532978..3533108 (25 bp)
GATGCTAGCGCATTATCAGATCACC
LOC_Os01g07460
OsAffx.23148.1.S1_at--444--4851Chr01:3532981..3533111 (25 bp)
GCTAGCGCATTATCAGATCACCTCG
LOC_Os01g07460
OsAffx.23148.1.S1_at--756--4571Chr01:3532985..3533115 (25 bp)
GCGCATTATCAGATCACCTCGCCGT
LOC_Os01g07460
OsAffx.23148.1.S1_at--240--8471Chr01:3533152..3533176 (25 bp)
TGGCCGGAGGCTACTCAGCACGCAG
LOC_Os01g07460
OsAffx.23148.1.S1_at--520--6211Chr01:3533158..3533182 (25 bp)
GAGGCTACTCAGCACGCAGAACCAG
LOC_Os01g07460
OsAffx.23148.1.S1_at--474--3731Chr01:3533162..3533186 (25 bp)
CTACTCAGCACGCAGAACCAGGTGA
LOC_Os01g07460
Target Sequence 
TAATCACTCTGCTGCTTGTCGTTGTCTCACGCCCACAATATTCCTTGGATGCTAGCGCATTATCAGATCACCTCGCCGTC
GGCGATGCGCCGCCGCCGCCGCCGCAGCACGGTGCTGGCCGGAGGCTACTCAGCACGCAGAACCAGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis