Browse Element(s) Details


Os.1678.1.S1_at

Description gb:C99695
DB_XREF= gi:3762447
DB_XREF=C99695
CLONE=E21103_4Z
TID=Os.1678.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1678 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C73890(E20948),C99695(E21103)~unknown protein (P0028E10.22), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0742010/11hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g027301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07376Os.16494.1.S1_at11/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_x_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07382Os.38232.1.S1_at11/111+3490123..3493361expressed protein
LOC_Os01g07390Os.46325.1.A1_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07390OsAffx.10539.1.S1_x_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07400Os.10353.1.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07400Os.10353.2.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_x_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_s_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410Os.17118.1.A1_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07420Os.1678.1.S1_at10/111+3513526..3515887hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g07430OsAffx.23147.1.S1_at11/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07430Os.57514.1.S1_x_at1/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07439NANA1+3525868..3526633NA
LOC_Os01g07450OsAffx.19945.1.S1_at11/111+3529661..3530551Myb-like DNA-binding domain containing protein
LOC_Os01g07460OsAffx.23148.1.S1_at11/111+3532885..3533269hypothetical protein
LOC_Os01g07470OsAffx.17666.1.S1_at1/111+3537643..3538074hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1678.1.S1_at--855--5831Chr08:1143425..1143454 (23 bp)
GACCTCCTCCGGAAATATTTCGCGG
LOC_Os08g02730
Os.1678.1.S1_at--474--6191Chr01:3514227..3514251 (25 bp)
GAGGAACAAGACTCGCAGCTTAATT
LOC_Os01g07420
Os.1678.1.S1_at--1056--1211Chr01:3514066..3514090 (25 bp)
AGTTCGACCAGATTTTCCCTGTGGA
LOC_Os01g07420
Os.1678.1.S1_at--700--8471Chr01:3513872..3513896 (25 bp)
TGGCGCACCAGGAGGATCCCAAGAT
LOC_Os01g07420
Os.1678.1.S1_at--263--6291Chr01:3513850..3513874 (25 bp)
GATGTTCAACGATATCCTGCTCAAG
LOC_Os01g07420
Os.1678.1.S1_at--1020--331Chr01:3513763..3513787 (25 bp)
ATACAATGCGATCTGCTTTTCCGGC
LOC_Os01g07420
Os.1678.1.S1_at--2--3931Chr01:3513742..3513766 (25 bp)
CGGCCATCGGGTACTCGGGTGTAAT
LOC_Os01g07420
Os.1678.1.S1_at--434--3771Chr01:3513729..3513753 (25 bp)
CTCGGGTGTAATGGTTCAGGATCTT
LOC_Os01g07420
Os.1678.1.S1_at--1126--991Chr01:3513712..3513736 (25 bp)
AGGATCTTTGATTCGTGTTTCTTAA
LOC_Os01g07420
Os.1678.1.S1_at--770--10231Chr01:3513615..3513639 (25 bp)
TTTGGTTCAGCTACTTTGCGAAGTT
LOC_Os01g07420
Os.1678.1.S1_at--498--4091Chr01:3513597..3513621 (25 bp)
CGAAGTTATTTTGGAGTACGCTCAA
LOC_Os01g07420
Target Sequence 
GACCTCCTCCGGAAATATTTCGCGGACAAAAGAGAGGAGAAGATCCGGCTGATCAAAGAGATCGTCACCGAGGAACAAGA
CTCGCAGCTTAATTCTCCTCTCCCTCAAGAAATTTTGATCATCTGGGGGGAGTTCGACCAGATTTTCCCTGTGGAGAAAG
CACACAAAGTGAAAGAGATGCTTGGGGAGAAGGCGACGGTGAAGATAATACCGAACACGGGGCACCTGGCGCACCAGGAG
GATCCCAAGATGTTCAACGATATCCTGCTCAAGTTCTTGCTGCCTTCTCCTGCCGTCGCCAATGGTGCAAAATAATCAAG
TGTGCTAATACAATTATACAATGCGATCTGCTTTTCCGGCCATCGGGTACTCGGGTGTAATGGTTCAGGATCTTTGATTC
GTGTTTCTTAAATTTCGAATTGTGTNATTGGTTGCATTTGAATTTNTCATGGTCGAGAGAGGAGAGACATCGAAATGTTT
TGNTTTGGTTCAGCTACTTTGCGAAGTTATTTTGGAGTACGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis