Browse Element(s) Details


Os.38232.1.S1_at

Description gb:AK063678.1
DB_XREF= gi:32973696
TID=Os.38232.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 3, T5P19.80 (P0028E10.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E03, full insert sequence.
FL= gb:AK063678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0738211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07350Os.23703.2.S1_x_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.2.S1_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.1.A1_at10/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07360Os.34142.1.S1_at11/111+3470648..3474136CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07364Os.50345.1.S1_at11/111+3475339..3475780expressed protein
LOC_Os01g07370Os.37822.3.A1_s_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07370Os.37822.1.A1_a_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07376Os.16494.1.S1_at11/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_x_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07382Os.38232.1.S1_at11/111+3490123..3493361expressed protein
LOC_Os01g07390Os.46325.1.A1_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07390OsAffx.10539.1.S1_x_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07400Os.10353.1.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07400Os.10353.2.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_x_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_s_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410Os.17118.1.A1_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07420Os.1678.1.S1_at10/111+3513526..3515887hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g07430OsAffx.23147.1.S1_at11/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07430Os.57514.1.S1_x_at1/111+3517580..3518778Myb-like DNA-binding domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38232.1.S1_at--619--2331Chr01:3490346..3490370 (25 bp)
AAAGATTACGTGAGGAGTACGAAGA
LOC_Os01g07382
Os.38232.1.S1_at--1090--3931Chr01:3490314..3490338 (25 bp)
CGGCAAGAAGCTGAGAACCTGGAGA
LOC_Os01g07382
Os.38232.1.S1_at--558--2611Chr01:3490299..3490323 (25 bp)
AACCTGGAGAAAACCACTTGACACA
LOC_Os01g07382
Os.38232.1.S1_at--950--8531Chr01:3490295..3490319 (25 bp)
TGGAGAAAACCACTTGACACAATTA
LOC_Os01g07382
Os.38232.1.S1_at--384--10751Chr01:3490282..3490306 (25 bp)
TTGACACAATTAACCGCATCGATTT
LOC_Os01g07382
Os.38232.1.S1_at--1086--3171Chr01:3490276..3490300 (25 bp)
CAATTAACCGCATCGATTTTTTCGT
LOC_Os01g07382
Os.38232.1.S1_at--1101--2611Chr01:3490271..3490295 (25 bp)
AACCGCATCGATTTTTTCGTGTTGT
LOC_Os01g07382
Os.38232.1.S1_at--756--4971Chr01:3490267..3490291 (25 bp)
GCATCGATTTTTTCGTGTTGTGCAT
LOC_Os01g07382
Os.38232.1.S1_at--62--10631Chr01:3490256..3490280 (25 bp)
TTCGTGTTGTGCATTTTGTTCTTCC
LOC_Os01g07382
Os.38232.1.S1_at--296--2471Chr01:3490229..3490253 (25 bp)
AACACTCCACACTAAGTAGCAACCA
LOC_Os01g07382
Os.38232.1.S1_at--656--6951Chr01:3490214..3490238 (25 bp)
GTAGCAACCAACGTTTCAACAGCGA
LOC_Os01g07382
Target Sequence 
AAAGATTACGTGAGGAGTACGAAGAAAGGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCG
CATCGATTTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTTTCAACAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis