Browse Element(s) Details


Os.37822.1.A1_a_at

Description gb:AK121992.1
DB_XREF= gi:37991615
TID=Os.37822.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative endo-beta-1,4-glucanase (P0489G09.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033109K22, full insert sequence.
FL= gb:AK111165.1 gb:AK121992.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0737011/11CENP-E like kinetochore protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07320OsAffx.10952.2.S1_s_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.2.S1_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.1.S1_at1/111+3452056..3452861hypothetical protein
LOC_Os01g07330Os.34951.1.S1_at11/111+3453671..3461754expressed protein
LOC_Os01g07330Os.34951.2.S1_x_at4/111+3453671..3461754expressed protein
LOC_Os01g07340Os.34951.2.S1_at9/111+3462436..3464322expressed protein
LOC_Os01g07340Os.34951.2.S1_x_at6/111+3462436..3464322expressed protein
LOC_Os01g07350Os.23703.2.S1_x_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.2.S1_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.1.A1_at10/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07360Os.34142.1.S1_at11/111+3470648..3474136CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07364Os.50345.1.S1_at11/111+3475339..3475780expressed protein
LOC_Os01g07370Os.37822.3.A1_s_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07370Os.37822.1.A1_a_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07376Os.16494.1.S1_at11/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_x_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07382Os.38232.1.S1_at11/111+3490123..3493361expressed protein
LOC_Os01g07390Os.46325.1.A1_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07390OsAffx.10539.1.S1_x_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07400Os.10353.1.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07400Os.10353.2.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37822.1.A1_a_at--411--10551Chr01:3476795..3476819 (25 bp)
TTCTTCAGAGAAAACTACAGTCGAT
LOC_Os01g07370
Os.37822.1.A1_a_at--851--2011Chr01:3476782..3476806 (25 bp)
ACTACAGTCGATAACAAGGTGGCTA
LOC_Os01g07370
Os.37822.1.A1_a_at--371--7211Chr01:3476776..3476800 (25 bp)
GTCGATAACAAGGTGGCTAGCTTAC
LOC_Os01g07370
Os.37822.1.A1_a_at--949--3211Chr01:3476768..3476792 (25 bp)
CAAGGTGGCTAGCTTACTGACCGAT
LOC_Os01g07370
Os.37822.1.A1_a_at--438--7531Chr01:3476764..3476788 (25 bp)
GTGGCTAGCTTACTGACCGATGTCA
LOC_Os01g07370
Os.37822.1.A1_a_at--100--4871Chr01:3476761..3476785 (25 bp)
GCTAGCTTACTGACCGATGTCACAG
LOC_Os01g07370
Os.37822.1.A1_a_at--1072--9911Chr01:3476754..3476778 (25 bp)
TACTGACCGATGTCACAGCTCGTGA
LOC_Os01g07370
Os.37822.1.A1_a_at--216--5831Chr01:3476750..3476774 (25 bp)
GACCGATGTCACAGCTCGTGATGAG
LOC_Os01g07370
Os.37822.1.A1_a_at--375--6271Chr01:3476746..3476770 (25 bp)
GATGTCACAGCTCGTGATGAGAAGA
LOC_Os01g07370
Os.37822.1.A1_a_at--578--4271Chr01:3476687..3476711 (25 bp)
CCTGGAGCATGTCAAGCTGATTGCA
LOC_Os01g07370
Os.37822.1.A1_a_at--832--7731Chr01:3476639..3476663 (25 bp)
GGTGTCGGAGCTGCGAGCACGGGTG
LOC_Os01g07370
Target Sequence 
TTCTTCAGAGAAAACTACAGTCGATAACAAGGTGGCTAGCTTACTGACCGATGTCACAGCTCGTGATGAGAAGATCAGGG
AGATGGACAGCCACCTGCACCAGCTGCACCTGGAGCATGTCAAGCTGATTGCAGAGGCAGATGCCGTGACGAAGGCGGTG
TCGGAGCTGCGAGCACGGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37822.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis