Browse Element(s) Details


Os.34951.2.S1_at

Description gb:NM_184528.1
DB_XREF= gi:34896145
GEN=P0701D05.28
TID=Os.34951.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0701D05.28 (P0701D05.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0701D05.28 (P0701D05.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g073409/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07300Os.1665.1.S1_a_at11/111+3441961..3443395expressed protein
LOC_Os01g07300Os.1665.2.S1_x_at11/111+3441961..3443395expressed protein
LOC_Os01g07310Os.9898.1.S1_at11/111+3443739..3446984integral membrane protein, putative, expressed
LOC_Os01g07320OsAffx.10952.2.S1_s_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.2.S1_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.1.S1_at1/111+3452056..3452861hypothetical protein
LOC_Os01g07330Os.34951.1.S1_at11/111+3453671..3461754expressed protein
LOC_Os01g07330Os.34951.2.S1_x_at4/111+3453671..3461754expressed protein
LOC_Os01g07340Os.34951.2.S1_at9/111+3462436..3464322expressed protein
LOC_Os01g07340Os.34951.2.S1_x_at6/111+3462436..3464322expressed protein
LOC_Os01g07350Os.23703.2.S1_x_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.2.S1_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.1.A1_at10/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07360Os.34142.1.S1_at11/111+3470648..3474136CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07364Os.50345.1.S1_at11/111+3475339..3475780expressed protein
LOC_Os01g07370Os.37822.3.A1_s_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07370Os.37822.1.A1_a_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07376Os.16494.1.S1_at11/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_x_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34951.2.S1_at--331--9131Chr01:3462617..3462641 (25 bp)
TGCTGGTGAAGAGCCTGTGGAGGGA
LOC_Os01g07340
Os.34951.2.S1_at--706--4511Chr01:3462489..3462513 (25 bp)
GCCGACCTGAAGAAGGTCTCCGACA
LOC_Os01g07340
Os.34951.2.S1_at--66--1771Chr01:3462485..3462509 (25 bp)
ACCTGAAGAAGGTCTCCGACATCTA
LOC_Os01g07340
Os.34951.2.S1_at--834--3831Chr01:3462483..3462507 (25 bp)
CTGAAGAAGGTCTCCGACATCTACT
LOC_Os01g07340
Os.34951.2.S1_at--882--8971Chr01:3462482..3462506 (25 bp)
TGAAGAAGGTCTCCGACATCTACTA
LOC_Os01g07340
Os.34951.2.S1_at--1066--2731Chr01:3462480..3462504 (25 bp)
AAGAAGGTCTCCGACATCTACTACG
LOC_Os01g07340
Os.34951.2.S1_at--208--1471Chr01:3462479..3462503 (25 bp)
AGAAGGTCTCCGACATCTACTACGG
LOC_Os01g07340
Os.34951.2.S1_at--961--2891Chr01:3462477..3462501 (25 bp)
AAGGTCTCCGACATCTACTACGGCT
LOC_Os01g07340
Os.34951.2.S1_at--1023--9891Chr01:3462462..3462486 (25 bp)
TACTACGGCTGCTTCACTCAGCCTG
LOC_Os01g07340
Os.34951.2.S1_at--945--1671NONE
AGCCTGCAGCACAGACACAATCCAT
NONE
Os.34951.2.S1_at--727--5051NONE
GCAGCACAGACACAATCCATCGCCT
NONE
Target Sequence 
TGCTGGTGAAGAGCCTGTGGAGGGAGGGGAAGCTCCGGGAGGCGGCGCAGGTGGAGGAGAGGTGCGAGGAGGCGGCCGGC
GACGGCCTCCCGGAGGCGTCGCCGGGGCACGTGTGGACGGCGAGCGCCGCCGACCTGAAGAAGGTCTCCGACATCTACTA
CGGCTGCTTCACTCAGCCTGCAGCACAGACACAATCCATCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34951.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis