Browse Element(s) Details


OsAffx.10952.1.S1_at

Description gb:NM_184526.1
DB_XREF= gi:34896141
GEN=P0701D05.26
TID=OsAffx.10952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0701D05.26 (P0701D05.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g073201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07270OsAffx.22756.2.S1_x_at2/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07270OsAffx.25729.2.S1_x_at1/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07280OsAffx.22756.3.S1_at10/111+3428408..3432420Leucine Rich Repeat family protein, expressed
LOC_Os01g07289NANA1+3433444..3434022NA
LOC_Os01g07300Os.1665.1.S1_a_at11/111+3441961..3443395expressed protein
LOC_Os01g07300Os.1665.2.S1_x_at11/111+3441961..3443395expressed protein
LOC_Os01g07310Os.9898.1.S1_at11/111+3443739..3446984integral membrane protein, putative, expressed
LOC_Os01g07320OsAffx.10952.2.S1_s_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.2.S1_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.1.S1_at1/111+3452056..3452861hypothetical protein
LOC_Os01g07330Os.34951.1.S1_at11/111+3453671..3461754expressed protein
LOC_Os01g07330Os.34951.2.S1_x_at4/111+3453671..3461754expressed protein
LOC_Os01g07340Os.34951.2.S1_at9/111+3462436..3464322expressed protein
LOC_Os01g07340Os.34951.2.S1_x_at6/111+3462436..3464322expressed protein
LOC_Os01g07350Os.23703.2.S1_x_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.2.S1_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.1.A1_at10/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07360Os.34142.1.S1_at11/111+3470648..3474136CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07364Os.50345.1.S1_at11/111+3475339..3475780expressed protein
LOC_Os01g07370Os.37822.3.A1_s_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07370Os.37822.1.A1_a_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10952.1.S1_at--731--7211Chr01:3452152..3452311 (25 bp)
GTCCTCCCCGGGAGCAAGCTGGCGC
LOC_Os01g07320
OsAffx.10952.1.S1_at--707--3791Chr01:3452847..3452871 (25 bp)
CTCCTCAACTGGTAGAAATTCGCTG
NONE
OsAffx.10952.1.S1_at--596--3231Chr01:3452852..3452876 (25 bp)
CAACTGGTAGAAATTCGCTGGATCC
NONE
OsAffx.10952.1.S1_at--1035--7831Chr01:3452857..3452881 (25 bp)
GGTAGAAATTCGCTGGATCCATTCA
NONE
OsAffx.10952.1.S1_at--990--5591Chr01:3452861..3452885 (25 bp)
GAAATTCGCTGGATCCATTCACCTA
NONE
OsAffx.10952.1.S1_at--775--91Chr01:3452864..3452888 (25 bp)
ATTCGCTGGATCCATTCACCTAGTG
NONE
OsAffx.10952.1.S1_at--57--4711Chr01:3452868..3452892 (25 bp)
GCTGGATCCATTCACCTAGTGGCTG
NONE
OsAffx.10952.1.S1_at--752--7971Chr01:3452871..3452895 (25 bp)
GGATCCATTCACCTAGTGGCTGGAT
NONE
OsAffx.10952.1.S1_at--118--4331Chr01:3452875..3452899 (25 bp)
CCATTCACCTAGTGGCTGGATCACA
NONE
OsAffx.10952.1.S1_at--241--10531Chr01:3452878..3452902 (25 bp)
TTCACCTAGTGGCTGGATCACATTG
NONE
OsAffx.10952.1.S1_at--1061--1731Chr01:3452881..3452905 (25 bp)
ACCTAGTGGCTGGATCACATTGAAT
NONE
Target Sequence 
GTCCTCCCCGGGAGCAAGCTGGCGCGCTTCCCCTCCATCTGGCGCCGCAAGAAGCCGCCGCCGCCGGCGCGCGCCACCGC
CGCCTCTCAGCTATGGCGGAACCGAGCAACAATGGCGTGGCCGGCTCATGGCGGAAGGAGATGGCCGGCGAGGACGACGG
CGACGGCGGCGCTGTACCTCGTCGCCGCGCTCGCCGTCGTGATGGCTTCCACCGCGGCGGTTCGAGCCATGAATGGGTAT
GGGAGAGGATACTACGAACCGGTTGGTCACAGCAAGTCATGGAGATTCTTGGTTGCGAAGAAGATTGCCAGGTTGTTGGA
GTTGGAGCCTCGCCTCTACGCGTGGCTCATGAAGATCAGCTTGAACCGGCTCCTCAACTGGTAGAAATTCGCTGGATCCA
TTCACCTAGTGGCTGGATCACATTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis