Browse Element(s) Details


OsAffx.22756.2.S1_x_at

Description gb:NM_184522.1
DB_XREF= gi:34896133
GEN=P0701D05.21
TID=OsAffx.22756.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0701D05.21 (P0701D05.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g072702/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07212OsAffx.23145.1.S1_s_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.18398.1.S1_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212OsAffx.23145.1.S1_at10/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.20407.1.S1_at1/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07224NANA1+3409051..3410420NA
LOC_Os01g07240Os.54072.1.S1_x_at11/111+3411667..3412767expressed protein
LOC_Os01g07250Os.37707.2.S1_x_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07250Os.37707.1.S1_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07260Os.18583.2.S1_x_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.2.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.1.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07270OsAffx.22756.2.S1_x_at2/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07270OsAffx.25729.2.S1_x_at1/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07280OsAffx.22756.3.S1_at10/111+3428408..3432420Leucine Rich Repeat family protein, expressed
LOC_Os01g07289NANA1+3433444..3434022NA
LOC_Os01g07300Os.1665.1.S1_a_at11/111+3441961..3443395expressed protein
LOC_Os01g07300Os.1665.2.S1_x_at11/111+3441961..3443395expressed protein
LOC_Os01g07310Os.9898.1.S1_at11/111+3443739..3446984integral membrane protein, putative, expressed
LOC_Os01g07320OsAffx.10952.2.S1_s_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.2.S1_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.1.S1_at1/111+3452056..3452861hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22756.2.S1_x_at--195--4091Chr01:3427437..3427461 (25 bp)
CGACCGCGGTAGTGGCCTTCCAGAG
LOC_Os01g07270
OsAffx.22756.2.S1_x_at--691--7951Chr01:3427698..3427721 (24 bp)
GGATACGCGACAACAGCGACCGCGA
LOC_Os01g07270
OsAffx.22756.2.S1_x_at--144--4511Chr01:3428432..3428456 (25 bp)
GCCGATGGTTGAGCCGTCCAAGAGC
NONE
OsAffx.22756.2.S1_x_at--1007--4191Chr01:3428501..3428525 (25 bp)
CCCGGTTGGCGTTGTGTATGTGATA
NONE
OsAffx.22756.2.S1_x_at--258--10011Chr01:3428524..3428548 (25 bp)
TAGAAGGCCAGGAACCCGCGCCATT
NONE
OsAffx.22756.2.S1_x_at--150--3751Chr01:3428555..3428708 (25 bp)
CTCAACAGGAGCAGCGTTGCCGGAT
NONE
OsAffx.22756.2.S1_x_at--35--7971Chr01:3428705..3428729 (25 bp)
GGATCTACGCCCTCCAGAGTCTGAA
NONE
OsAffx.22756.2.S1_x_at--176--5271Chr01:3428737..3428761 (25 bp)
GAATCCTCTCCGTTGCGTGTCTCTG
NONE
OsAffx.22756.2.S1_x_at--246--10091Chr01:3428770..3428794 (25 bp)
TAGGCTATGGAGGAGCAACTTGCTT
NONE
OsAffx.22756.2.S1_x_at--511--5111Chr01:3428784..3428808 (25 bp)
GCAACTTGCTTTCTATTTACTTCGG
NONE
OsAffx.22756.2.S1_x_at--394--4891Chr01:3428791..3428815 (25 bp)
GCTTTCTATTTACTTCGGATGCTAA
NONE
Target Sequence 
CGACCGCGGTAGTGGCCTTCCAGAGGGTGTCGGCGACGGCGATGTCCGCGGTGGAGTGCACCGGGACGATGGCGACGCCG
TCGTTGCTGGAAGGGAGATTCGGGCGGGGCGGGAGCTCGCGGCGGCGGTCGAGCCTGAACGCGTTCGACATCATCTCCTT
CTCTCCGGCAACTCCAGCGCCGGCGGCGGAGGTGGAGCTGTACCGCCGCGGCAGCCGCACCCGGCATCCGAACTTCCCAC
CGCCGCCGTCGCCTCGCTGCAGGATACGCGACAACAGCGACCGCGAGAGCGCGGGCCGATGGTTGAGCCGTCCAAGAGCG
GCGGCGGCGCGGCGCTCCGGCGAGCGGCGGCCGGAGTCGCTCTCCCGGTTGGCGTTGTGTATGTGATAGAAGGCCAGGAA
CCCGCGCCATTGCTCTTCTCAACAGGAGCAGCGTTGCCGGATCTACGCCCTCCAGAGTCTGAACCCCTCCGAATCCTCTC
CGTTGCGTGTCTCTGGGGTAAAGTAGGCTATGGAGGAGCAACTTGCTTTCTATTTACTTCGGATGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22756.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis