Browse Element(s) Details


Os.20407.1.S1_at

Description gb:AK100006.1
DB_XREF= gi:32985215
TID=Os.20407.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135P10, full insert sequence.
FL= gb:AK100006.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5526010/11expressed protein
LOC_Os01g072121/11Staphylococcal nuclease homologue family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55230Os.7692.1.S2_at11/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55230Os.7692.1.S1_at10/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55240Os.52439.1.S1_at11/114+32633073..32634031VQ motif family protein, expressed
LOC_Os04g55250Os.51420.1.S1_at11/114+32636588..32637580expressed protein
LOC_Os04g55260Os.20407.1.S1_at10/114+32637521..32641208expressed protein
LOC_Os04g55270OsAffx.4183.1.S1_at10/114+32644603..32645667hypothetical protein
LOC_Os04g55280NANA4+32645881..32648257hypothetical protein
LOC_Os04g55290Os.3537.1.S1_at11/114+32649048..32652552G10 protein homolog, putative, expressed
LOC_Os04g55290OsAffx.16132.1.S1_at1/114+32649048..32652552G10 protein homolog, putative, expressed
LOC_Os04g55300OsAffx.26611.2.S1_at9/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.26611.1.S1_x_at8/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.32209.1.A1_at5/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.32283.1.S1_at1/114+32652874..32655325hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20407.1.S1_at--470--51Chr04:32638393..32638417 (25 bp)
ATTGACCGCATTAGGCATTGAACCA
LOC_Os04g55260
Os.20407.1.S1_at--386--10231Chr04:32638223..32638325 (25 bp)
TATTGTCAGACTACTTCTGGGCTCT
LOC_Os04g55260
Os.20407.1.S1_at--302--9471NONE
TCTGGGCTCTTTCTGTTGTTTGGAC
NONE
Os.20407.1.S1_at--28--6872Chr01:3401347..3401663 (25 bp)
GTTTGGACTACTCCTTTGGTGGCCA
LOC_Os01g07212
Os.20407.1.S1_at--73--1751Chr04:32638167..32638191 (25 bp)
ACCTTGGGCATGTCACTCACAATTC
LOC_Os04g55260
Os.20407.1.S1_at--1099--791Chr04:32638112..32638136 (25 bp)
ATGGTCGTCGTTATTCAGCGGTCTA
LOC_Os04g55260
Os.20407.1.S1_at--655--1611Chr04:32638096..32638120 (25 bp)
AGCGGTCTATATCTTTGGTTCTGTC
LOC_Os04g55260
Os.20407.1.S1_at--122--2271Chr04:32637812..32637836 (25 bp)
AAATCTTGCGGATCGCTTTTCACGT
LOC_Os04g55260
Os.20407.1.S1_at--813--471Chr04:32637801..32637825 (25 bp)
ATCGCTTTTCACGTTTTCTAGGGCT
LOC_Os04g55260
Os.20407.1.S1_at--242--10071Chr04:32637775..32637799 (25 bp)
TAGTGTCACGAAATCAACCAGGTTT
LOC_Os04g55260
Os.20407.1.S1_at--128--10431Chr04:32637593..32637617 (25 bp)
TTATGCTGTAGCAACCCTTGCAACT
LOC_Os04g55260
Target Sequence 
ATTGACCGCATTAGGCATTGAACCAAAGTTTACAATACCCCACTCAGCCAAAGTGGATGAAGTGGTGTTGGCAAATGGCC
TTATTGGAAGTGTATTGTCAGACTACTTCTGGGCTCTTTCTGTTGTTTGGACTACTCCTTTGGTGGCCACCTTGGGCATG
TCACTCACAATTCCACTAGCAATGGTGGCTGATATGATCATTCATGGTCGTCGTTATTCAGCGGTCTATATCTTTGGTTC
TGTCCAGGTATTTTNTGGGTTTGTCATTGCAAATCTTGCGGATCGCTTTTCACGTTTTCTAGGGCTNTAGTGTCACGAAA
TCAACCAGGTTTTATTAGAGTGTACATCTGTGTGGATCGTTAGACAAATACCCTTGTTTCATAAGATTGCGAAAATGTTA
CTGTAGTTTTTTTTTTCTCTTGGCCCTTTACACACNAGGAATGGAAAATTTTTGTGGCGGTGAAATAGAAAAGAGTGACT
TGAAGAAACTTTATGCTGTAGCAACCCTTGCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis