Browse Element(s) Details


Os.3537.1.S1_at

Description gb:AK066959.1
DB_XREF= gi:32976977
TID=Os.3537.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative G10 protein (P0683F02.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093N15, full insert sequence.
FL= gb:AK099794.1 gb:AK066959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6389011/11G10 protein homolog, putative, expressed
LOC_Os04g5529011/11G10 protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63854OsAffx.11717.1.S1_s_at11/111+37370345..37376740expressed protein
LOC_Os01g63854Os.4919.1.S1_at11/111+37370345..37376740expressed protein
LOC_Os01g63870Os.35149.1.S1_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.35149.2.S1_x_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.57399.1.S1_at1/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63880Os.9790.2.S1_x_at10/111+37392500..37395745expressed protein
LOC_Os01g63890Os.3537.1.S1_at11/111+37396270..37398738G10 protein homolog, putative, expressed
LOC_Os01g63900Os.46280.1.A1_at11/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63900Os.20081.1.S1_x_at10/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63910Os.46440.1.A1_s_at11/111+37407138..37415781AT hook motif family protein, expressed
LOC_Os01g63910Os.27347.3.S1_at5/111+37407138..37415781AT hook motif family protein, expressed
LOC_Os01g63920OsAffx.23908.1.S1_at11/111+37420192..37420557hypothetical protein
LOC_Os01g63930Os.17805.1.S2_at11/111+37423134..37425979Cytochrome P450 family protein, expressed
LOC_Os01g63930Os.17805.1.S1_at11/111+37423134..37425979Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3537.1.S1_at--1044--7292Chr04:32650515..32650539 (25 bp)
GTGCGAAGCCCTCTGGCCAATTTTC
LOC_Os04g55290
Os.3537.1.S1_at--77--4392Chr04:32650500..32650524 (25 bp)
GCCAATTTTCCGTATTTCCCATCAA
LOC_Os04g55290
Os.3537.1.S1_at--516--10252Chr04:32650486..32650510 (25 bp)
TTTCCCATCAAAGAAGTCGCTACAT
LOC_Os04g55290
Os.3537.1.S1_at--1083--1332Chr04:32650425..32650449 (25 bp)
AGAGTTGTATGAGTTTTGCCTGGAC
LOC_Os04g55290
Os.3537.1.S1_at--116--7852Chr04:32650404..32650428 (25 bp)
GGACCAGGGTTATGCAGACCGTAAT
LOC_Os04g55290
Os.3537.1.S1_at--739--4452Chr04:32649418..32649442 (25 bp)
GCCTTTGCTGTCTTCGATGCATACA
LOC_Os04g55290
Os.3537.1.S1_at--413--4732Chr04:32649295..32649319 (25 bp)
GCTGTGCCAGCGGTGATTGAGATAT
LOC_Os04g55290
Os.3537.1.S1_at--251--1772Chr04:32649146..32649170 (25 bp)
ACCTGAGATTGTGGTTACGGTCTGC
LOC_Os04g55290
Os.3537.1.S1_at--308--9932Chr04:32649131..32649155 (25 bp)
TACGGTCTGCATTAATCTGCCGCAT
LOC_Os04g55290
Os.3537.1.S1_at--980--3052Chr04:32649118..32649142 (25 bp)
AATCTGCCGCATGGTCATTGCTTGA
LOC_Os04g55290
Os.3537.1.S1_at--747--7132Chr04:32649105..32649129 (25 bp)
GTCATTGCTTGATCATCGGCCTCAA
LOC_Os04g55290
Target Sequence 
GTGCGAAGCCCTCTGGCCAATTTTCCGTATTTCCCATCAAAGAAGTCGCTACATATATGATCTTTATTACAGAAGGAAGG
AGATATCAAAAGAGTTGTATGAGTTTTGCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGCCN
GGNTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACAACTTTGCAACTACATGNGTCTGCCGGGTCCC
CAAGCATCTCAGAGAGGAGAAGGTTATAGAATGTGTTCACTGTGGATGCAGAGGCTGTGCCAGCGGTGATTGAGATATCG
TCATTATCTTGTTTGAATNTGTCAAACTAAGCAGACANTNATGTTTCTTGAGCGAAATTTCGGCTAAAAACGTTTACGAA
AACGTTTTGTAAACCNGCCTACCGGGTATGACGTTATTTAAGTACCTGAGATTGTGGTTACGGTCTGCATTAATCTGCCG
CATGGTCATTGCTTGATCATCGGCCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis