Browse Element(s) Details


Os.4919.1.S1_at

Description gb:AK103684.1
DB_XREF= gi:32988893
TID=Os.4919.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1402_H07.15 (OJ1402_H07.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136F15, full insert sequence.
FL= gb:AK103684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6385411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63810Os.21123.1.S1_at11/111+37348393..37350692Starch binding domain containing protein, expressed
LOC_Os01g63820Os.37564.2.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.54436.1.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.1.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_at9/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63830OsAffx.23907.1.S1_at10/111+37361249..37362498Dehydrodolichyl diphosphate synthase 2, putative, expressed
LOC_Os01g63840Os.38338.1.S1_x_at10/111+37366416..373700603-deoxy-D-manno-octulosonic-acid transferase family protein, expressed
LOC_Os01g63854OsAffx.11717.1.S1_s_at11/111+37370345..37376740expressed protein
LOC_Os01g63854Os.4919.1.S1_at11/111+37370345..37376740expressed protein
LOC_Os01g63870Os.35149.1.S1_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.35149.2.S1_x_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.57399.1.S1_at1/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63880Os.9790.2.S1_x_at10/111+37392500..37395745expressed protein
LOC_Os01g63890Os.3537.1.S1_at11/111+37396270..37398738G10 protein homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4919.1.S1_at--183--3371Chr01:37370894..37370918 (25 bp)
CAGCCGACCAACGAGGTCCTGGAGG
LOC_Os01g63854
Os.4919.1.S1_at--727--2951Chr01:37370852..37370876 (25 bp)
AAGGCCGGGCAGTACGCCGCGAGGA
LOC_Os01g63854
Os.4919.1.S1_at--420--5451Chr01:37370742..37370766 (25 bp)
GAACGCGCTCATCGGCGCATTCGGC
LOC_Os01g63854
Os.4919.1.S1_at--49--9191Chr01:37370695..37370719 (25 bp)
TGCCGGCGGTGTTCTACAACGTGAC
LOC_Os01g63854
Os.4919.1.S1_at--909--4651Chr01:37370690..37370714 (25 bp)
GCGGTGTTCTACAACGTGACGTTCA
LOC_Os01g63854
Os.4919.1.S1_at--583--9831Chr01:37370681..37370705 (25 bp)
TACAACGTGACGTTCAAGCCGTCCA
LOC_Os01g63854
Os.4919.1.S1_at--573--5611Chr01:37370673..37370697 (25 bp)
GACGTTCAAGCCGTCCAAGAAGGGC
LOC_Os01g63854
Os.4919.1.S1_at--66--1151Chr01:37370586..37370610 (25 bp)
AGTCGCCGCGGTCCGGCAGATCATT
LOC_Os01g63854
Os.4919.1.S1_at--845--3551Chr01:37370434..37370458 (25 bp)
CATCTTCCCACTTATGTTTATATTA
LOC_Os01g63854
Os.4919.1.S1_at--418--351Chr01:37370379..37370403 (25 bp)
ATAATTTATAGCATGTCTTTAGTGA
LOC_Os01g63854
Os.4919.1.S1_at--985--291Chr01:37370372..37370396 (25 bp)
ATAGCATGTCTTTAGTGATTTAAAA
LOC_Os01g63854
Target Sequence 
CAGCCGACCAACGAGGTCCTGGAGGGCCTCCTGTCCGACCCCAAGGCCGGGCAGTACGCCGCGAGGAACGTCGCGCCGCG
GGTGCTCTCCCGCACCGCCGCCGTCGCGCTGGGCACCACCATCGCGGCCATGGTGCCCTTCTTCGGCGACATGAACGCGC
TCATCGGCGCATTCGGCTTCCTCCCGCTCGACTTCGCTGTGCCGGCGGTGTTCTACAACGTGACGTTCAAGCCGTCCAAG
AAGGGCGCCGTGTTCTGGCTCAACACCACCATCGCCGTCGTGTTCTCCGCGCTCGCTGTCGTCGCGTCAGTCGCCGCGGT
CCGGCAGATCATTCTGGACGCCAATAGCTATAAACTGTTCGCGAACGTGTGATGTTATTATGCTTTAACTCTTGACAAAG
GAACATCAATGCAGGAAGAAGATTTTTTTTNCCTTTTCTTTTTCTTTTTTTTAAAAGAAGTCATCTTCCCACTTATGTTT
ATATTATATTTATTAATCATTTATTAGCAACTAAAAATAATTTATAGCATGTCTTTAGTGATTTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis