Browse Element(s) Details


Os.57399.1.S1_at

Description gb:AK111458.1
DB_XREF= gi:32996667
TID=Os.57399.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-C09, full insert sequence.
FL= gb:AK111458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3912011/11expressed protein
LOC_Os01g638701/11xanthine/uracil permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39080Os.47590.1.A1_s_at11/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39080Os.51713.1.S1_at10/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39090Os.12685.1.S1_at11/115+22836130..22841236Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g39100OsAffx.15021.1.S1_x_at9/115+22844527..22845251hypothetical protein
LOC_Os05g39110Os.9357.1.S1_at11/115+22849528..22852649selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os05g39120Os.57399.1.S1_at11/115+22854120..22857464expressed protein
LOC_Os05g39130OsAffx.25007.2.S1_at1/115+22862782..22869989retrotransposon protein, putative, unclassified
LOC_Os05g39140Os.12242.1.S1_at11/115+22872129..22877626expressed protein
LOC_Os05g39140Os.48582.1.A1_s_at10/115+22872129..22877626expressed protein
LOC_Os05g39150Os.51909.1.S1_at11/115+22878075..22881251expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57399.1.S1_at--135--6991Chr05:22855222..22855246 (25 bp)
GTACCTGATATTCCTCCACGAGGTT
LOC_Os05g39120
Os.57399.1.S1_at--946--6171Chr05:22855282..22855306 (25 bp)
GAGGAGTTCTCCTGATGACGTCAAC
LOC_Os05g39120
Os.57399.1.S1_at--371--9531Chr05:22855307..22855331 (25 bp)
TCTAGTTCAGTTGTGCCATGCATCC
LOC_Os05g39120
Os.57399.1.S1_at--195--3371Chr05:22855335..22855359 (25 bp)
CACCGTGGCTCGAATCATGTCAGAT
LOC_Os05g39120
Os.57399.1.S1_at--1093--311Chr05:22856170..22856194 (25 bp)
ATACTCTGGCAGACACACTGGTTGT
LOC_Os05g39120
Os.57399.1.S1_at--574--4972Chr05:22856222..22856245 (24 bp)
GCATCAGTCGATTCATCTTTTGGTT
LOC_Os05g39120
Os.57399.1.S1_at--481--10411Chr05:22857122..22857142 (21 bp)
TTTTGGTTCCTTGGGACTGACTGGA
LOC_Os05g39120
Os.57399.1.S1_at--28--2051Chr05:22857249..22857273 (25 bp)
ACTTTGCTGGTCCAACTTGTTGAAT
LOC_Os05g39120
Os.57399.1.S1_at--384--10011Chr05:22857372..22857396 (25 bp)
TAGAAGCTGGGCATGGTACTCCTAT
LOC_Os05g39120
Os.57399.1.S1_at--63--7011Chr05:22857387..22857411 (25 bp)
GTACTCCTATGAACCCAATGTTTGT
LOC_Os05g39120
Os.57399.1.S1_at--1157--10371Chr05:22857411..22857435 (25 bp)
TTTTCAGGACACTTATCTCTCATAA
LOC_Os05g39120
Target Sequence 
GTACCTGATATTCCTCCACGAGGTTCTTGCCGTGGACATGGCCAAGGGCGAGGTGATTGGGAGGAGTTCTCCTGATGACG
TCAACTCTAGTTCAGTTGTGCCATGCATCCTACCACCGTGGCTCGAATCATGTCAGATCCCCTCTGCAGCAACCCTTTCG
AGCAAGAAGACTGATGTTGAAAGAAATACTCTGGCAGACACACTGGTTGTGTGGATAGAGGCAGTTAAAACTGAACTGCA
TCAGTCGATTCATCTTTTGGTTCCTTGGGACTGACTGGAAGAGATGTTCGAGAGAACTTGTTTAGATGGTAGCAGTTTCC
TGAAGTACCTGAACTCTCGTTTTTGGGGGATGCTGTGAGAAGTTTGGGTTTTGATGCGCATTTGGACTTTGCTGGTCCAA
CTTGTTGAATTTCGTTTTGGACAAACACCGGGGAATGTTAACATATTTTCGTATTTTTCCTTTTCTTCCATACCTGTTGA
ATGGTTAAGTAGAATGAGTATCTCCAAGTAGAAGCTGGGCATGGTACTCCTATGAACCCAATGTTTGTTTTCAGGACACT
TATCTCTCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis