Browse Element(s) Details


OsAffx.15021.1.S1_x_at

Description tigr:9633.m03635
TID=OsAffx.15021.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g391009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39050Os.12348.4.S1_at11/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_x_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39060OsAffx.15019.1.S1_s_at11/115+22821181..22822863expressed protein
LOC_Os05g39070OsAffx.15020.1.S1_at9/115+22824769..22827122NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g39080Os.47590.1.A1_s_at11/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39080Os.51713.1.S1_at10/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39090Os.12685.1.S1_at11/115+22836130..22841236Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g39100OsAffx.15021.1.S1_x_at9/115+22844527..22845251hypothetical protein
LOC_Os05g39110Os.9357.1.S1_at11/115+22849528..22852649selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os05g39120Os.57399.1.S1_at11/115+22854120..22857464expressed protein
LOC_Os05g39130OsAffx.25007.2.S1_at1/115+22862782..22869989retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15021.1.S1_x_at--874--4091Chr05:22844571..22844595 (25 bp)
CGACGGAGGTGGCTGTGGCCAGGCA
LOC_Os05g39100
OsAffx.15021.1.S1_x_at--345--7731Chr05:22844578..22844602 (25 bp)
GGTGGCTGTGGCCAGGCAGCAGTGA
LOC_Os05g39100
OsAffx.15021.1.S1_x_at--67--7551Chr05:22844579..22844603 (25 bp)
GTGGCTGTGGCCAGGCAGCAGTGAG
LOC_Os05g39100
OsAffx.15021.1.S1_x_at--993--3891Chr05:22844583..22844607 (25 bp)
CTGTGGCCAGGCAGCAGTGAGCAAC
LOC_Os05g39100
OsAffx.15021.1.S1_x_at--1065--8651Chr05:22844584..22844608 (25 bp)
TGTGGCCAGGCAGCAGTGAGCAACA
LOC_Os05g39100
OsAffx.15021.1.S1_x_at--920--8451Chr05:22844586..22844610 (25 bp)
TGGCCAGGCAGCAGTGAGCAACAGC
LOC_Os05g39100
OsAffx.15021.1.S1_x_at--1106--3471Chr05:22844590..22844614 (25 bp)
CAGGCAGCAGTGAGCAACAGCGGCG
LOC_Os05g39100
OsAffx.15021.1.S1_x_at--184--3411Chr05:22844594..22844618 (25 bp)
CAGCAGTGAGCAACAGCGGCGGCAT
LOC_Os05g39100
OsAffx.15021.1.S1_x_at--457--1531Chr05:22844595..22844619 (25 bp)
AGCAGTGAGCAACAGCGGCGGCATC
LOC_Os05g39100
OsAffx.15021.1.S1_x_at--1059--4971NONE
GCATCGACGACGGTTCTCTGCAAGA
NONE
OsAffx.15021.1.S1_x_at--948--3531NONE
CATCGACGACGGTTCTCTGCAAGAG
NONE
Target Sequence 
CGACGGAGGTGGCTGTGGCCAGGCAGCAGTGAGCAACAGCGGCGGCATCGACGACGGTTCTCTGCAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15021.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis