Browse Element(s) Details


OsAffx.15020.1.S1_at

Description tigr:9633.m03632
TID=OsAffx.15020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NLI interacting factor-like phosphatase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g390709/11NLI interacting factor-like phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39010NANA5+22800592..22803611hypothetical protein
LOC_Os05g39020NANA5+22804463..22805301retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_s_at11/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.1.S1_x_at9/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_x_at8/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.4.S1_x_at1/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39040NANA5+22813027..22817860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39050Os.12348.4.S1_at11/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_x_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39060OsAffx.15019.1.S1_s_at11/115+22821181..22822863expressed protein
LOC_Os05g39070OsAffx.15020.1.S1_at9/115+22824769..22827122NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g39080Os.47590.1.A1_s_at11/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39080Os.51713.1.S1_at10/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39090Os.12685.1.S1_at11/115+22836130..22841236Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g39100OsAffx.15021.1.S1_x_at9/115+22844527..22845251hypothetical protein
LOC_Os05g39110Os.9357.1.S1_at11/115+22849528..22852649selT/selW/selH selenoprotein domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000775cellular_componentchromosome, pericentric region
GO:0005634cellular_componentnucleus
GO:0005694cellular_componentchromosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15020.1.S1_at--364--911NONE
AGGCGGCTCACGGTAGTGCTTGATT
NONE
OsAffx.15020.1.S1_at--709--4831NONE
GCTCACGGTAGTGCTTGATTTGGAT
NONE
OsAffx.15020.1.S1_at--960--9531Chr05:22825840..22825864 (25 bp)
TCTAGTTTGTGCATATGAGTCATCA
LOC_Os05g39070
OsAffx.15020.1.S1_at--43--711Chr05:22825854..22825878 (25 bp)
ATGAGTCATCAAGTCTTCCTGCTGC
LOC_Os05g39070
OsAffx.15020.1.S1_at--707--9571Chr05:22825879..22825903 (25 bp)
TCTTCGTGCCGAGGCTGTTGAAGCA
LOC_Os05g39070
OsAffx.15020.1.S1_at--514--6211Chr05:22825889..22825913 (25 bp)
GAGGCTGTTGAAGCAGGACTGCATT
LOC_Os05g39070
OsAffx.15020.1.S1_at--22--8531Chr05:22825923..22825947 (25 bp)
TGGAGTGCATATCCGCTGAAAAGGC
LOC_Os05g39070
OsAffx.15020.1.S1_at--542--8231Chr05:22826241..22826260 (20 bp)
GGCAAGATATGCAAAACCATTAGTT
LOC_Os05g39070
OsAffx.15020.1.S1_at--711--6651Chr05:22826888..22827000 (25 bp)
GTTGATGATCAGCTTATGGGAGTTA
LOC_Os05g39070
OsAffx.15020.1.S1_at--957--9011Chr05:22827028..22827052 (25 bp)
TGCAAAATGATGTTAGACCGGCATT
LOC_Os05g39070
OsAffx.15020.1.S1_at--481--10031Chr05:22827041..22827065 (25 bp)
TAGACCGGCATTGTATGAAACATTT
LOC_Os05g39070
Target Sequence 
AGGCGGCTCACGGTAGTGCTTGATTTGGATGAAACTCTAGTTTGTGCATATGAGTCATCAAGTCTTCCTGCTGCTCTTCG
TGCCGAGGCTGTTGAAGCAGGACTGCATTGCTTTGACATGGAGTGCATATCCGCTGAAAAGGCAAGATATGCAAAACCAT
TAGTTGACAGGATAGATGCTCACAACAGATTCTGTCACCGTCTCTACAGGCCATCAACTGTTACCACGGAATATAGAGAG
CATGTAAAAGATCTTTCTTGTTTGTCGAAAGATTTCCACAGAATTGTCCTTGTTGATAACAATCCATATAGTTTCCTGCT
GCAACCATTGAATGGAATACCTTGTCTTACATTCTCGGCTGGACAACCTGTTGATGATCAGCTTATGGGAGTTATATTTC
CACTTCTCAAGCACCTTTCTCTGCAAAATGATGTTAGACCGGCATTGTATGAAACATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis