Browse Element(s) Details


OsAffx.15019.1.S1_s_at

Description tigr:9633.m03631
TID=OsAffx.15019.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3906011/11expressed protein
LOC_Os04g525901/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39000Os.53410.1.S1_at11/115+22795522..22798595kinase interacting protein 1, putative, expressed
LOC_Os05g39010NANA5+22800592..22803611hypothetical protein
LOC_Os05g39020NANA5+22804463..22805301retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_s_at11/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.1.S1_x_at9/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_x_at8/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.4.S1_x_at1/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39040NANA5+22813027..22817860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39050Os.12348.4.S1_at11/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_x_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39060OsAffx.15019.1.S1_s_at11/115+22821181..22822863expressed protein
LOC_Os05g39070OsAffx.15020.1.S1_at9/115+22824769..22827122NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g39080Os.47590.1.A1_s_at11/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39080Os.51713.1.S1_at10/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39090Os.12685.1.S1_at11/115+22836130..22841236Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g39100OsAffx.15021.1.S1_x_at9/115+22844527..22845251hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15019.1.S1_s_at--4--8471Chr05:22821725..22821749 (25 bp)
TGGCCGTATCGGTAATGCTTATGAG
LOC_Os05g39060
OsAffx.15019.1.S1_s_at--1162--6571Chr05:22821694..22821718 (25 bp)
GATTCCACATTGTATGATGGTTCAG
LOC_Os05g39060
OsAffx.15019.1.S1_s_at--112--1091Chr05:22821648..22821672 (25 bp)
AGGGCTACAGCATGTCGAGTGGAAA
LOC_Os05g39060
OsAffx.15019.1.S1_s_at--955--651Chr05:22821603..22821627 (25 bp)
ATGCACTGCAGCCTTCAACCGATGA
LOC_Os05g39060
OsAffx.15019.1.S1_s_at--1128--2611Chr05:22821587..22821611 (25 bp)
AACCGATGACTCTGGTGTTCCCTTC
LOC_Os05g39060
OsAffx.15019.1.S1_s_at--312--6352Chr05:22821555..22821579 (25 bp)
GATGCTGTTCTGAACTTCTGCAGTA
LOC_Os05g39060
OsAffx.15019.1.S1_s_at--970--9471Chr05:22821539..22821563 (25 bp)
TCTGCAGTATGCACTTTTCGATTCT
LOC_Os05g39060
OsAffx.15019.1.S1_s_at--349--1951Chr05:22821501..22821525 (25 bp)
ACTGGACTGTCAATCAAGTAACTGC
LOC_Os05g39060
OsAffx.15019.1.S1_s_at--611--3011Chr05:22821429..22821453 (25 bp)
AATGCTGAATTTTGCCTACCTGTAT
LOC_Os05g39060
OsAffx.15019.1.S1_s_at--813--3591Chr05:22821367..22821391 (25 bp)
CATTCAGAGTTCAGTGGGTGTGCAA
LOC_Os05g39060
OsAffx.15019.1.S1_s_at--937--5151Chr05:22821346..22821370 (25 bp)
GCAACTGTGCATCATGGACCTGGAT
LOC_Os05g39060
Target Sequence 
TGGCCGTATCGGTAATGCTTATGAGGATGAGGATTCCACATTGTATGATGGTTCAGATGATTTGCACATGAGCTCCGAGG
GCTACAGCATGTCGAGTGGAAAGAAATATGTTATCAAGATTAATGCACTGCAGCCTTCAACCGATGACTCTGGTGTTCCC
TTCACCCTGTGATGCTGTTCTGAACTTCTGCAGTATGCACTTTTCGATTCTTGCCTTGCGCTATACTGGACTGTCAATCA
AGTAACTGCAGAACCAAGAGATTACGTGCTAGTGTGTAACTGTATATTTTGATAGGAATGCTGAATTTTGCCTACCTGTA
TTTATAAAATGGAAGAGTTTGTTGTCTATTTACATATACATTCAGAGTTCAGTGGGTGTGCAACTGTGCATCATGGACCT
GGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15019.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis