Browse Element(s) Details


Os.12348.4.S1_at

Description gb:AK119240.1
DB_XREF= gi:37988863
TID=Os.12348.4
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H4 (P0506B12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-A04, full insert sequence.
FL= gb:AK119240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3905011/11Histone H4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39000Os.53410.1.S1_at11/115+22795522..22798595kinase interacting protein 1, putative, expressed
LOC_Os05g39010NANA5+22800592..22803611hypothetical protein
LOC_Os05g39020NANA5+22804463..22805301retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_s_at11/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.1.S1_x_at9/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_x_at8/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.4.S1_x_at1/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39040NANA5+22813027..22817860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39050Os.12348.4.S1_at11/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_x_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39060OsAffx.15019.1.S1_s_at11/115+22821181..22822863expressed protein
LOC_Os05g39070OsAffx.15020.1.S1_at9/115+22824769..22827122NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g39080Os.47590.1.A1_s_at11/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39080Os.51713.1.S1_at10/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39090Os.12685.1.S1_at11/115+22836130..22841236Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g39100OsAffx.15021.1.S1_x_at9/115+22844527..22845251hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0007001biological_processchromosome organization and biogenesis (sensu Eukaryota)
GO:0009414biological_processresponse to water deprivation
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12348.4.S1_at--903--7191Chr05:22820364..22820388 (25 bp)
GTCGTCTGGCCGTGCCCACAAGTCT
LOC_Os05g39050
Os.12348.4.S1_at--835--7291Chr05:22820375..22820399 (25 bp)
GTGCCCACAAGTCTTGCGGTCAAGA
LOC_Os05g39050
Os.12348.4.S1_at--560--6751Chr05:22820435..22820459 (25 bp)
GTTCAGTTCGCTGTTTAGTTTTTCT
LOC_Os05g39050
Os.12348.4.S1_at--902--9591Chr05:22820437..22820461 (25 bp)
TCAGTTCGCTGTTTAGTTTTTCTAG
LOC_Os05g39050
Os.12348.4.S1_at--416--6811Chr05:22820452..22820476 (25 bp)
GTTTTTCTAGTGTTTACCTGAATCA
LOC_Os05g39050
Os.12348.4.S1_at--743--6831Chr05:22820527..22820551 (25 bp)
GTTTCAGAGCCAATGTTGTGGATCT
LOC_Os05g39050
Os.12348.4.S1_at--833--5851Chr05:22820533..22820557 (25 bp)
GAGCCAATGTTGTGGATCTGTCCTC
LOC_Os05g39050
Os.12348.4.S1_at--883--3191Chr05:22820537..22820561 (25 bp)
CAATGTTGTGGATCTGTCCTCTTGT
LOC_Os05g39050
Os.12348.4.S1_at--265--492Chr05:22820548..22820572 (25 bp)
ATCTGTCCTCTTGTTGATGTGCAAT
LOC_Os05g39050
Os.12348.4.S1_at--42--7272Chr05:22820552..22820576 (25 bp)
GTCCTCTTGTTGATGTGCAATTTGT
LOC_Os05g39050
Os.12348.4.S1_at--318--8871Chr05:22820562..22820586 (25 bp)
TGATGTGCAATTTGTGTTTGTCCGT
LOC_Os05g39050
Target Sequence 
GTCGTCTGGCCGTGCCCACAAGTCTTGCGGTCAAGAAAAAAAGTTTGATGGAAAGCCGTNGAATCCACCTTGTTCAGTTC
GCTGTTTAGTTTTTCTAGTGTTTACCTGAATCATGAAATTGTGAAGCAAATGATGTTTGCAACTGGGATTTGAATTGAAA
CATGTTTCAGAGCCAATGTTGTGGATCTGTCCTCTTGTTGATGTGCAATTTGTGTTTGTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12348.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis