Browse Element(s) Details


Os.12348.5.S1_x_at

Description gb:AK105816.1
DB_XREF= gi:32991025
TID=Os.12348.5
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H4 (P0506B12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C11, full insert sequence.
FL= gb:AK105816.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3874010/11Histone H4, putative, expressed
LOC_Os05g390501/11Histone H4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38710Os.28320.1.S1_at11/115+22625566..22630697lipin, N-terminal conserved region family protein, expressed
LOC_Os05g38710OsAffx.11471.1.S1_at1/115+22625566..22630697lipin, N-terminal conserved region family protein, expressed
LOC_Os05g38720Os.51943.1.S1_at11/115+22636077..22637822Lung seven transmembrane receptor family protein, expressed
LOC_Os05g38730Os.35152.1.S1_at11/115+22642424..22650828SAC3/GANP family protein, expressed
LOC_Os05g38740Os.12348.5.S1_x_at10/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38740Os.12348.5.S1_at9/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38750NANA5+22656487..22656882hypothetical protein
LOC_Os05g38760OsAffx.15015.1.S1_at11/115+22660704..22661267Histone H4, putative
LOC_Os05g38770Os.49683.1.S1_at11/115+22661891..22664464Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g38780OsAffx.19826.2.S1_at11/115+22668358..22669491hypothetical protein
LOC_Os05g38790OsAffx.15016.1.S1_at11/115+22672990..22675464IQ calmodulin-binding motif family protein
LOC_Os05g38800Os.53840.1.S1_at11/115+22675874..22678699PWWP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0007001biological_processchromosome organization and biogenesis (sensu Eukaryota)
GO:0009414biological_processresponse to water deprivation
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12348.5.S1_x_at--132--8392Chr05:22654000..22654024 (25 bp)
GGCGAGCCACCGGAATCGTCGTCGT
LOC_Os05g38740
Os.12348.5.S1_x_at--889--8351NONE
GGCGGCTGATCGATCGTACCTCCAT
NONE
Os.12348.5.S1_x_at--301--9511Chr05:22653631..22653655 (25 bp)
TCTCCCATGTTGTCTGGCCGTGGAA
LOC_Os05g38740
Os.12348.5.S1_x_at--1003--8811Chr05:22653624..22653648 (25 bp)
TGTTGTCTGGCCGTGGAATCCACCT
LOC_Os05g38740
Os.12348.5.S1_x_at--396--7532Chr05:22820421..22820445 (25 bp)
GTGGAATCCACCTTGTTCAGTTCGC
LOC_Os05g39050
Os.12348.5.S1_x_at--321--9231Chr05:22653596..22653620 (25 bp)
TCAGTTCGCCGTTTAGTTTTGTAGG
LOC_Os05g38740
Os.12348.5.S1_x_at--136--6811Chr05:22653581..22653605 (25 bp)
GTTTTGTAGGGTTTACCTGAATCAT
LOC_Os05g38740
Os.12348.5.S1_x_at--372--1771Chr05:22653567..22653591 (25 bp)
ACCTGAATCATGAAACTGTGAAGCA
LOC_Os05g38740
Os.12348.5.S1_x_at--254--6291Chr05:22653542..22653566 (25 bp)
GATGATGTTTGCACCTGGGATTTGA
LOC_Os05g38740
Os.12348.5.S1_x_at--231--5091Chr05:22653532..22653556 (25 bp)
GCACCTGGGATTTGAATTGAAACAT
LOC_Os05g38740
Os.12348.5.S1_x_at--553--5531Chr05:22653514..22653538 (25 bp)
GAAACATGTTTCAGGGCCAATGTTA
LOC_Os05g38740
Target Sequence 
GGCGAGCCACCGGAATCGTCGTCGTCGGCGGCCATGTCGGGGCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGC
CAAGCGTCACCGGAAGGTGCTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGCG
GCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGAC
GCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG
CACCCTCTACGGCTTCGGCGGCTGATCGATCGTACCTCCATCCCCCATCTCTCCCATGTTGTCTGGCCGTGGAATCCACC
TTGTTCAGTTCGCCGTTTAGTTTTGTAGGGTTTACCTGAATCATGAAACTGTGAAGCAGATGATGTTTGCACCTGGGATT
TGAATTGAAACATGTTTCAGGGCCAATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12348.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis