Browse Element(s) Details


Os.53840.1.S1_at

Description gb:AK100354.1
DB_XREF= gi:32985563
TID=Os.53840.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083G23, full insert sequence.
FL= gb:AK100354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3880011/11PWWP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38740Os.12348.5.S1_x_at10/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38740Os.12348.5.S1_at9/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38750NANA5+22656487..22656882hypothetical protein
LOC_Os05g38760OsAffx.15015.1.S1_at11/115+22660704..22661267Histone H4, putative
LOC_Os05g38770Os.49683.1.S1_at11/115+22661891..22664464Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g38780OsAffx.19826.2.S1_at11/115+22668358..22669491hypothetical protein
LOC_Os05g38790OsAffx.15016.1.S1_at11/115+22672990..22675464IQ calmodulin-binding motif family protein
LOC_Os05g38800Os.53840.1.S1_at11/115+22675874..22678699PWWP domain containing protein, expressed
LOC_Os05g38810Os.22684.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38810Os.55770.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38820Os.27839.1.S1_at10/115+22686909..22690898CCAAT-binding transcription factor subunit HAP3B, putative, expressed
LOC_Os05g38830Os.51950.1.S1_at11/115+22692887..22695920HECT-domain family protein, expressed
LOC_Os05g38840OsAffx.27230.1.S1_at11/115+22703537..22704079hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53840.1.S1_at--682--9111Chr05:22678054..22678078 (25 bp)
TGCTGCAAACGCTTTCAGTGTTGTT
LOC_Os05g38800
Os.53840.1.S1_at--1064--1551Chr05:22678088..22678112 (25 bp)
AGCTATTTTGGACCTTCGCTTTGTA
LOC_Os05g38800
Os.53840.1.S1_at--136--9351Chr05:22678103..22678127 (25 bp)
TCGCTTTGTAGTTTTCGGCTTGTAA
LOC_Os05g38800
Os.53840.1.S1_at--212--6431Chr05:22678124..22678148 (25 bp)
GTAAATTTGCCATTTTCCCTATCCA
LOC_Os05g38800
Os.53840.1.S1_at--705--9271Chr05:22678139..22678163 (25 bp)
TCCCTATCCAAGTTAAGCCCTGAAG
LOC_Os05g38800
Os.53840.1.S1_at--995--9791Chr05:22678152..22678176 (25 bp)
TAAGCCCTGAAGATCCTGGCACGGA
LOC_Os05g38800
Os.53840.1.S1_at--1078--811Chr05:22678361..22678385 (25 bp)
ATGGTCGATCCAGCAGGGCGAGCTA
LOC_Os05g38800
Os.53840.1.S1_at--865--5571Chr05:22678486..22678510 (25 bp)
GAAAGTGTTGTCTCATCCGGGTGAT
LOC_Os05g38800
Os.53840.1.S1_at--431--291Chr05:22678582..22678606 (25 bp)
ATAGTCATGCTTTTTCTGTACAAAC
LOC_Os05g38800
Os.53840.1.S1_at--305--2372Chr05:22678614..22678638 (25 bp)
AAACCACTGTCCGTTTATGGCAATT
LOC_Os05g38800
Os.53840.1.S1_at--852--8211Chr05:22678632..22678656 (25 bp)
GGCAATTAGATATCCTTCTGACCAT
LOC_Os05g38800
Target Sequence 
TGCTGCAAACGCTTTCAGTGTTGTTGGCAAGTATAGCTATTTTGGACCTTCGCTTTGTAGTTTTCGGCTTGTAAATTTGC
CATTTTCCCTATCCAAGTTAAGCCCTGAAGATCCTGGCACGGAGGTTCCTGCTTGTAGGGAGTCTGGAGTGGATATTGTG
CATGTTGGCATCATCAGCAAAGTTGATAAAGCTCAAAATCTGTAGAGAAAGCATCAGCGTTTGATATGGTCGATCCAGCA
GGGCGAGCTAACAAAATTGTAGGTGAGGGCACGGCTGAAGAATCAGATGAGAAAATCAGTTAGCTTTTCTTCCATTAAAA
CTTGTTTATATTCAGGTTTGTCTGCTAGATGAAAGTGTTGTCTCATCCGGGTGATGCATTTTGTATAGAAAACGGGAATC
CGACACTAGTATTAAAATGTTAGTCTTCAGTAACTAGAGCATGTATATAGTCATGCTTTTTCTGTACAAACTTAAGGTAA
ACCACTGTCCGTTTATGGCAATTAGATATCCTTCTGACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis