Browse Element(s) Details


Os.27839.1.S1_at

Description gb:AK100811.1
DB_XREF= gi:32986020
TID=Os.27839.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27839 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 21744 CCAAT-binding transcription factor-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121O11, full insert sequence.
FL= gb:AK100811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3882010/11CCAAT-binding transcription factor subunit HAP3B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38770Os.49683.1.S1_at11/115+22661891..22664464Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g38780OsAffx.19826.2.S1_at11/115+22668358..22669491hypothetical protein
LOC_Os05g38790OsAffx.15016.1.S1_at11/115+22672990..22675464IQ calmodulin-binding motif family protein
LOC_Os05g38800Os.53840.1.S1_at11/115+22675874..22678699PWWP domain containing protein, expressed
LOC_Os05g38810Os.22684.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38810Os.55770.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38820Os.27839.1.S1_at10/115+22686909..22690898CCAAT-binding transcription factor subunit HAP3B, putative, expressed
LOC_Os05g38830Os.51950.1.S1_at11/115+22692887..22695920HECT-domain family protein, expressed
LOC_Os05g38840OsAffx.27230.1.S1_at11/115+22703537..22704079hypothetical protein
LOC_Os05g38850Os.55411.1.S1_x_at11/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38850Os.55411.1.S1_at11/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38850Os.53530.1.S1_x_at10/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27839.1.S1_at--500--5391NONE
GAAGCAGTTCAAGTGCCCAAGGGAT
NONE
Os.27839.1.S1_at--1105--6491Chr05:22687389..22687413 (25 bp)
GATAGGACCTTTTCATGCAACTGTT
LOC_Os05g38820
Os.27839.1.S1_at--907--5151Chr05:22687282..22687397 (25 bp)
GCAACTGTTGCTAGCGCAGGTGGAT
LOC_Os05g38820
Os.27839.1.S1_at--900--211Chr05:22687254..22687278 (25 bp)
ATTTGGTGCTGCAGTCGTTAGCTAA
LOC_Os05g38820
Os.27839.1.S1_at--1016--9531Chr05:22687176..22687200 (25 bp)
TCTAGGTCCCATGTTTGTCAACCAG
LOC_Os05g38820
Os.27839.1.S1_at--499--10871Chr05:22687138..22687162 (25 bp)
TTGGAAGCGTCGAGCCAAGGCTGCT
LOC_Os05g38820
Os.27839.1.S1_at--1042--6151Chr05:22687108..22687132 (25 bp)
GATGTAAATTACTCCCCGTGAGGAT
LOC_Os05g38820
Os.27839.1.S1_at--1104--271Chr05:22687085..22687109 (25 bp)
ATAGTTTCGGTTCGTGGTCTAGCTC
LOC_Os05g38820
Os.27839.1.S1_at--845--7811Chr05:22687070..22687094 (25 bp)
GGTCTAGCTCTGTTGTTGTATGTAT
LOC_Os05g38820
Os.27839.1.S1_at--439--2451Chr05:22687031..22687055 (25 bp)
AACAATTGGTCTTTGGCTGTCATTC
LOC_Os05g38820
Os.27839.1.S1_at--187--6891Chr05:22686964..22686988 (25 bp)
GTATTTCGTCCTGAACTAGCGTGTT
LOC_Os05g38820
Target Sequence 
GAAGCAGTTCAAGTGCCCAAGGGATGGGCCAACAAGCAGCATACAATCAAGGAATGGGTTATATGCAACCTCAGTACCAT
AATGGGGATGTCTCAAACNTGAAGATAGGACCTTTTCATGCAACTGTTGCTAGCGCAGGTGGATTTTATTTGGTGCTGCA
GTCGTTAGCTAATATATATACCTACACCTCATGGTGAGCAGTGAAGGAAGTAACTTGCTACCACCTCTAGGTCCCATGTT
TGTCAACCAGGAACTGATGCTGCTTGGAAGCGTCGAGCCAAGGCTGCTTCNCAGATGTAAATTACTCCCCGTGAGGATAG
TTTCGGTTCGTGGTCTAGCTCTGTTGTTGTATGTATATTCAGGATAATTTAACAATTGGTCTTTGGCTGTCATTCNGTTC
CATATAATCTGTATTGGGAGGCATAAATATTCATGTTGTATTTCGTCCTGAACTAGCGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis