Browse Element(s) Details


Os.51950.1.S1_at

Description gb:AK064382.1
DB_XREF= gi:32974400
TID=Os.51950.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E02, full insert sequence.
FL= gb:AK064382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3883011/11HECT-domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38780OsAffx.19826.2.S1_at11/115+22668358..22669491hypothetical protein
LOC_Os05g38790OsAffx.15016.1.S1_at11/115+22672990..22675464IQ calmodulin-binding motif family protein
LOC_Os05g38800Os.53840.1.S1_at11/115+22675874..22678699PWWP domain containing protein, expressed
LOC_Os05g38810Os.22684.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38810Os.55770.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38820Os.27839.1.S1_at10/115+22686909..22690898CCAAT-binding transcription factor subunit HAP3B, putative, expressed
LOC_Os05g38830Os.51950.1.S1_at11/115+22692887..22695920HECT-domain family protein, expressed
LOC_Os05g38840OsAffx.27230.1.S1_at11/115+22703537..22704079hypothetical protein
LOC_Os05g38850Os.55411.1.S1_x_at11/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38850Os.55411.1.S1_at11/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38850Os.53530.1.S1_x_at10/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38860NANA5+22717529..22717780expressed protein
LOC_Os05g38870NANA5+22719323..22719634hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0016567biological_processprotein ubiquitination
GO:0042023biological_processDNA endoreduplication
GO:0000151cellular_componentubiquitin ligase complex
GO:0005739cellular_componentmitochondrion
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51950.1.S1_at--469--10451Chr05:22693872..22693896 (25 bp)
TTAGCTGCGCTAAATCCGAAGTTGA
LOC_Os05g38830
Os.51950.1.S1_at--1105--4731Chr05:22693739..22693763 (25 bp)
GCTGATGATGACCTTCCGAGTGTGA
LOC_Os05g38830
Os.51950.1.S1_at--1015--5531Chr05:22693247..22693271 (25 bp)
GAAACTACTCTACGCGATTACGGAA
LOC_Os05g38830
Os.51950.1.S1_at--649--7251Chr05:22693214..22693238 (25 bp)
GTCCTTCCACTTATCTTGACTTGAA
LOC_Os05g38830
Os.51950.1.S1_at--639--6491Chr05:22693186..22693210 (25 bp)
GATAGCATCTAGCTGCGCATGCCAT
LOC_Os05g38830
Os.51950.1.S1_at--470--8331Chr05:22693103..22693127 (25 bp)
TGGGTGGTTCACTGCTTAACTTACC
LOC_Os05g38830
Os.51950.1.S1_at--539--2411Chr05:22693038..22693062 (25 bp)
AAAAACTGAGGTGGCGCATGCCCTT
LOC_Os05g38830
Os.51950.1.S1_at--613--7851Chr05:22692996..22693020 (25 bp)
GGTAGTTGCCTGTAGGTGTGCTCAA
LOC_Os05g38830
Os.51950.1.S1_at--913--7731Chr05:22692982..22693006 (25 bp)
GGTGTGCTCAAGTAGTCGCGAACAT
LOC_Os05g38830
Os.51950.1.S1_at--369--5491Chr05:22692963..22692987 (25 bp)
GAACATGGCGACTCTCAGCTTAGCT
LOC_Os05g38830
Os.51950.1.S1_at--740--6291Chr05:22692928..22692952 (25 bp)
GATGCAAACCTTCTCTTTTGGTGTA
LOC_Os05g38830
Target Sequence 
TTAGCTGCGCTAAATCCGAAGTTGACGGTTGTCCGAAAGCATAACAGCAACGAGGCTGATGATGACCTTCCGAGTGTGAT
GACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACAAGATGAGGGAGAAACTACTCTACGCGATTACGG
AAGGTCAGGGGTCCTTCCACTTATCTTGACTTGAAACTGATAGCATCTAGCTGCGCATGCCATCACACGCAGTAGAAATG
TGTGTTTTGTAAGTATCACGTAGGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTACCAAGACATATGATTC
GGGTGGAGCTGATGTTAGGAAAGGGAAAAAACTGAGGTGGCGCATGCCCTTCCTTCTCTGTACATAGTGGTAGTTGCCTG
TAGGTGTGCTCAAGTAGTCGCGAACATGGCGACTCTCAGCTTAGCTCGCTGCTGTTGATGCAAACCTTCTCTTTTGGTGT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis