Browse Element(s) Details


OsAffx.27230.1.S1_at

Description tigr:9633.m03609
TID=OsAffx.27230.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3884011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38800Os.53840.1.S1_at11/115+22675874..22678699PWWP domain containing protein, expressed
LOC_Os05g38810Os.22684.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38810Os.55770.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38820Os.27839.1.S1_at10/115+22686909..22690898CCAAT-binding transcription factor subunit HAP3B, putative, expressed
LOC_Os05g38830Os.51950.1.S1_at11/115+22692887..22695920HECT-domain family protein, expressed
LOC_Os05g38840OsAffx.27230.1.S1_at11/115+22703537..22704079hypothetical protein
LOC_Os05g38850Os.55411.1.S1_x_at11/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38850Os.55411.1.S1_at11/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38850Os.53530.1.S1_x_at10/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38860NANA5+22717529..22717780expressed protein
LOC_Os05g38870NANA5+22719323..22719634hypothetical protein
LOC_Os05g38880Os.51299.1.S1_at11/115+22724181..22724752expressed protein
LOC_Os05g38890OsAffx.18122.1.S1_x_at1/115+22728660..22732949transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g38890OsAffx.3966.1.S1_at1/115+22728660..22732949transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27230.1.S1_at--786--2711Chr05:22704022..22704046 (25 bp)
AAGCACCATGGACGCGAGGTTGCCA
LOC_Os05g38840
OsAffx.27230.1.S1_at--188--851Chr05:22704015..22704039 (25 bp)
ATGGACGCGAGGTTGCCATGGCCAC
LOC_Os05g38840
OsAffx.27230.1.S1_at--340--7571Chr05:22703987..22704011 (25 bp)
GGGACGAATCCCACACGCGGCCTTG
LOC_Os05g38840
OsAffx.27230.1.S1_at--359--8411Chr05:22703923..22703947 (25 bp)
GGCCGTCGAGGAAGAATCCCACCCG
LOC_Os05g38840
OsAffx.27230.1.S1_at--178--10731Chr05:22703893..22703917 (25 bp)
TTGACCGCGGGACACGAATCCTGCT
LOC_Os05g38840
OsAffx.27230.1.S1_at--177--5271Chr05:22703878..22703902 (25 bp)
GAATCCTGCTTGGTCTCGGCTGTTC
LOC_Os05g38840
OsAffx.27230.1.S1_at--1070--10211Chr05:22703838..22703862 (25 bp)
TATTCCTCCGCTCAGGCGCTCGGGA
LOC_Os05g38840
OsAffx.27230.1.S1_at--161--4211Chr05:22703810..22703834 (25 bp)
CCCGCTTGCAGCCAGCAATGGAGGA
LOC_Os05g38840
OsAffx.27230.1.S1_at--346--7511Chr05:22703767..22703791 (25 bp)
GTGGAGATCGCGCTCCTGGTCCCAC
LOC_Os05g38840
OsAffx.27230.1.S1_at--329--1051Chr05:22703675..22703699 (25 bp)
AGGTGAAGAATCTCGCGCCGCAATG
LOC_Os05g38840
OsAffx.27230.1.S1_at--753--5171Chr05:22703656..22703680 (25 bp)
GCAATGGTCCTGGACTCGCCGGAGT
LOC_Os05g38840
Target Sequence 
AAGCACCATGGACGCGAGGTTGCCATGGCCACCCGGGGACGAATCCCACACGCGGCCTTGGCTATCAGCCACCGGGGCAA
GAGCTGCGTCCGCGCCCGCGGCCGTCGAGGAAGAATCCCACCCGCGCCCTTGACCGCGGGACACGAATCCTGCTTGGTCT
CGGCTGTTCCTCTGTCGGGGACCCTATTCCTCCGCTCAGGCGCTCGGGAGCTCCCGCTTGCAGCCAGCAATGGAGGAGGG
GCGCAGAGATGGGCGGTGGAGATCGCGCTCCTGGTCCCACGCCCTCCCGCCCCGTCACCGGCCATGGGACCAAGGGGATG
GGGGAGCCACGCCGCCACGGGGAGGGGAGGTGAAGAATCTCGCGCCGCAATGGTCCTGGACTCGCCGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis