Browse Element(s) Details


Os.51299.1.S1_at

Description gb:AK062470.1
DB_XREF= gi:32972488
TID=Os.51299.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-E07, full insert sequence.
FL= gb:AK062470.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3888011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38840OsAffx.27230.1.S1_at11/115+22703537..22704079hypothetical protein
LOC_Os05g38850Os.55411.1.S1_x_at11/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38850Os.55411.1.S1_at11/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38850Os.53530.1.S1_x_at10/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38860NANA5+22717529..22717780expressed protein
LOC_Os05g38870NANA5+22719323..22719634hypothetical protein
LOC_Os05g38880Os.51299.1.S1_at11/115+22724181..22724752expressed protein
LOC_Os05g38890OsAffx.18122.1.S1_x_at1/115+22728660..22732949transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g38890OsAffx.3966.1.S1_at1/115+22728660..22732949transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g38900Os.10827.1.S1_x_at6/115+22733542..22734999transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38900Os.46055.2.S1_x_at4/115+22733542..22734999transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38910NANA5+22735567..22736094hypothetical protein
LOC_Os05g38920OsAffx.25936.7.S1_s_at5/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38920OsAffx.25936.1.S1_s_at4/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38920OsAffx.25936.5.S1_x_at2/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38920OsAffx.25936.2.S1_x_at2/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38920OsAffx.25936.1.S1_at1/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38930OsAffx.27233.1.S1_at11/115+22743030..22743383hypothetical protein
LOC_Os05g38940Os.57316.1.S1_at3/115+22745254..22745496expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51299.1.S1_at--510--411Chr05:22724674..22724698 (25 bp)
ATCAGTGTGTGTTAAGTCGCAGCCT
LOC_Os05g38880
Os.51299.1.S1_at--800--9771Chr05:22724662..22724686 (25 bp)
TAAGTCGCAGCCTTGCAGGGTGATG
LOC_Os05g38880
Os.51299.1.S1_at--806--6231Chr05:22724641..22724665 (25 bp)
GATGGAGTACAGCTACTACGGCAAC
LOC_Os05g38880
Os.51299.1.S1_at--18--2031Chr05:22724627..22724651 (25 bp)
ACTACGGCAACTACTTGAGCGGCGG
LOC_Os05g38880
Os.51299.1.S1_at--894--7951Chr05:22724543..22724567 (25 bp)
GGATCGTGAGGAGCATCAGCAACCT
LOC_Os05g38880
Os.51299.1.S1_at--888--5031Chr05:22724403..22724427 (25 bp)
GCAGTTGCACTACATATACTTCCTT
LOC_Os05g38880
Os.51299.1.S1_at--995--2051Chr05:22724386..22724410 (25 bp)
ACTTCCTTAGTTTGTGTTCTTCTCT
LOC_Os05g38880
Os.51299.1.S1_at--1080--9551Chr05:22724369..22724393 (25 bp)
TCTTCTCTAATGCTCTGGTACTGTG
LOC_Os05g38880
Os.51299.1.S1_at--328--8831Chr05:22724322..22724346 (25 bp)
TGATTCTCCATCATGTCTGTCTCTA
LOC_Os05g38880
Os.51299.1.S1_at--517--5071Chr05:22724278..22724302 (25 bp)
GCAGCTGTTCATTTCTTGGCTTGAA
LOC_Os05g38880
Os.51299.1.S1_at--171--2951Chr05:22724240..22724264 (25 bp)
AATGGATCCGTCTGCCAAGTTCGAT
LOC_Os05g38880
Target Sequence 
ATCAGTGTGTGTTAAGTCGCAGCCTTGCAGGGTGATGGAGTACAGCTACTACGGCAACTACTTGAGCGGCGGCGGCGCCA
ACATGGCGAAGGAGAAGAGGCCACCGCTGAAGAGGGGGCAGGTCAAGCGCAGGATCGTGAGGAGCATCAGCAACCTCATG
GCCAACAACGCTGCTGCTGATGACGACTCCAACTCGGCCCAGGCTGCAGATCATCGCAACAGCTTCATCAGGAGAGAAGC
AAGCTACAATAATAACTAGATGTGTGTTCTTGCAGTTGCACTACATATACTTCCTTAGTTTGTGTTCTTCTCTAATGCTC
TGGTACTGTGCAAATAGATGCATATGCTATTTTGATTCTCCATCATGTCTGTCTCTACTCTCTGCTACTATACAGAGCAG
CTGTTCATTTCTTGGCTTGAATGAAGACAAGGGAAATGGATCCGTCTGCCAAGTTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis