Browse Element(s) Details


Os.55411.1.S1_x_at

Description gb:AK108033.1
DB_XREF= gi:32993242
TID=Os.55411.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55411 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-B12, full insert sequence.
FL= gb:AK108033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3885011/11DNA replication licensing factor MCM8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38810Os.22684.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38810Os.55770.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38820Os.27839.1.S1_at10/115+22686909..22690898CCAAT-binding transcription factor subunit HAP3B, putative, expressed
LOC_Os05g38830Os.51950.1.S1_at11/115+22692887..22695920HECT-domain family protein, expressed
LOC_Os05g38840OsAffx.27230.1.S1_at11/115+22703537..22704079hypothetical protein
LOC_Os05g38850Os.55411.1.S1_x_at11/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38850Os.55411.1.S1_at11/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38850Os.53530.1.S1_x_at10/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38860NANA5+22717529..22717780expressed protein
LOC_Os05g38870NANA5+22719323..22719634hypothetical protein
LOC_Os05g38880Os.51299.1.S1_at11/115+22724181..22724752expressed protein
LOC_Os05g38890OsAffx.18122.1.S1_x_at1/115+22728660..22732949transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g38890OsAffx.3966.1.S1_at1/115+22728660..22732949transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g38900Os.10827.1.S1_x_at6/115+22733542..22734999transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38900Os.46055.2.S1_x_at4/115+22733542..22734999transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38910NANA5+22735567..22736094hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006270biological_processDNA replication initiation
GO:0010182biological_processsugar mediated signaling
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55411.1.S1_x_at--473--2471Chr05:22708856..22708880 (25 bp)
AACACGGTGCTGATGTTTTTCGTCA
LOC_Os05g38850
Os.55411.1.S1_x_at--522--10371Chr05:22708872..22708896 (25 bp)
TTTTCGTCAAATTCTTCACTCCTTT
LOC_Os05g38850
Os.55411.1.S1_x_at--18--10711Chr05:22708896..22708920 (25 bp)
TTGCCCCTCTATCTATGGACATGAA
LOC_Os05g38850
Os.55411.1.S1_x_at--271--7051Chr05:22709558..22709577 (20 bp)
GTAAAAGCTGGTATCACCCTTGCGC
LOC_Os05g38850
Os.55411.1.S1_x_at--534--7331Chr05:22709589..22709613 (25 bp)
GTGCAGAAGCACTCCATTGATCAAA
LOC_Os05g38850
Os.55411.1.S1_x_at--23--1751Chr05:22710553..22710577 (25 bp)
ACCTTGTATAAGCTTCACTCTGAAA
LOC_Os05g38850
Os.55411.1.S1_x_at--529--151Chr05:22710583..22710607 (25 bp)
ATTAGAAAGCCCTAACCTGCCACAT
LOC_Os05g38850
Os.55411.1.S1_x_at--362--211Chr05:22710622..22710646 (25 bp)
ATTTGAGTTCATAGGCTTTACTGGA
LOC_Os05g38850
Os.55411.1.S1_x_at--153--7531Chr05:22710690..22710714 (25 bp)
GTGGCAAGTTTATCAGCCCGTACTT
LOC_Os05g38850
Os.55411.1.S1_x_at--1144--7011Chr05:22710709..22710733 (25 bp)
GTACTTCTGTGCTAGCGGCTGCTAA
LOC_Os05g38850
Os.55411.1.S1_x_at--428--4771Chr05:22710726..22710750 (25 bp)
GCTGCTAATCCTGTTGGTGGTCATT
LOC_Os05g38850
Target Sequence 
AACACGGTGCTGATGTTTTTCGTCAAATTCTTCACTCCTTTTGCCCCTCTATCTATGGACATGAACTTGTAAAAGCTGGT
ATCACCCTTGCGCTTTTCGGTGGTGTGCAGAAGCACTCCATTGATCAAAACAAGGTCCCAGTGAGAGGAGACATTCATGC
TGTTGTTGTTGGTGATCCTGGACTAGGCAAGAGTCAACTGCTACAGGCTGCAGCAGCTGTTTCTCCACGGGGTATATATG
TTTGTGGGAATACAACAACAAATGCTGGTCTAACTGTTGCTGTGGTTAAAGATTCTATGTCAAATGATTATGCATTTGAG
GCTGGTGCCATGGTCCTTGCTGACCGTGGAATATGCTGTATCGATGAGTTCGATAAAATGTCAGCAGAGCATCAGGTTTT
AACCTTGTATAAGCTTCACTCTGAAATGTTAATTAGAAAGCCCTAACCTGCCACATCATGTTTCTAATGAATTTGAGTTC
ATAGGCTTTACTGGAAGCCATGGAGCAGCAATGTGTATCTGTGGCAAAGGCTGGCCTTGTGGCAAGTTTATCAGCCCGTA
CTTCTGTGCTAGCGGCTGCTAATCCTGTTGGTGGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55411.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis