Browse Element(s) Details


Os.22684.1.S1_at

Description gb:AK105760.1
DB_XREF= gi:32990969
TID=Os.22684.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D06, full insert sequence.
FL= gb:AK099541.1 gb:AK105760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3881011/11PWWP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38750NANA5+22656487..22656882hypothetical protein
LOC_Os05g38760OsAffx.15015.1.S1_at11/115+22660704..22661267Histone H4, putative
LOC_Os05g38770Os.49683.1.S1_at11/115+22661891..22664464Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g38780OsAffx.19826.2.S1_at11/115+22668358..22669491hypothetical protein
LOC_Os05g38790OsAffx.15016.1.S1_at11/115+22672990..22675464IQ calmodulin-binding motif family protein
LOC_Os05g38800Os.53840.1.S1_at11/115+22675874..22678699PWWP domain containing protein, expressed
LOC_Os05g38810Os.22684.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38810Os.55770.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38820Os.27839.1.S1_at10/115+22686909..22690898CCAAT-binding transcription factor subunit HAP3B, putative, expressed
LOC_Os05g38830Os.51950.1.S1_at11/115+22692887..22695920HECT-domain family protein, expressed
LOC_Os05g38840OsAffx.27230.1.S1_at11/115+22703537..22704079hypothetical protein
LOC_Os05g38850Os.55411.1.S1_x_at11/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38850Os.55411.1.S1_at11/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed
LOC_Os05g38850Os.53530.1.S1_x_at10/115+22706088..22710750DNA replication licensing factor MCM8, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22684.1.S1_at--530--1131Chr05:22685719..22685743 (25 bp)
AGTCGGCTCAACTGATTCATCCAAT
LOC_Os05g38810
Os.22684.1.S1_at--357--771Chr05:22685748..22685772 (25 bp)
ATGTCGTGTGGAATCAACTCTAGCA
LOC_Os05g38810
Os.22684.1.S1_at--180--1171Chr05:22685793..22685817 (25 bp)
AGTAACTACGGCGTATTTGCTGCCT
LOC_Os05g38810
Os.22684.1.S1_at--470--2111Chr05:22685832..22685856 (25 bp)
ACATGTAGTTGTCTTGGGAGCAGCA
LOC_Os05g38810
Os.22684.1.S1_at--398--7771Chr05:22685896..22685920 (25 bp)
GGTGCGACAGCCAGTGGACCAGCTA
LOC_Os05g38810
Os.22684.1.S1_at--792--132Chr05:22685937..22685961 (25 bp)
ATTAAGCCATGTTCTTTCCTACTAC
LOC_Os05g38810
Os.22684.1.S1_at--972--7611Chr05:22685990..22686014 (25 bp)
GGGACTCATGATTCTTGTACCAATC
LOC_Os05g38810
Os.22684.1.S1_at--419--3911Chr05:22686029..22686053 (25 bp)
CTGGCTGTGTTCTGTAGGTTATTTC
LOC_Os05g38810
Os.22684.1.S1_at--1022--7871Chr05:22686045..22686069 (25 bp)
GGTTATTTCTCCTTTATTCCATCAT
LOC_Os05g38810
Os.22684.1.S1_at--207--4751Chr05:22686089..22686113 (25 bp)
GCTGATTCTACATTTCTGGTTGCAA
LOC_Os05g38810
Os.22684.1.S1_at--465--7911Chr05:22686106..22686130 (25 bp)
GGTTGCAACTTATCTAATCTCATCA
LOC_Os05g38810
Target Sequence 
AGTCGGCTCAACTGATTCATCCAATCTGGATGTCGTGTGGAATCAACTCTAGCAACATAGCGATATTAGTTTCTAGTAAC
TACGGCGTATTTGCTGCCTNCTATATAAACCTTACATGTAGTTGTCTTGGGAGCAGCAGCAGTGTGTCACGAATAGAAGA
GTTTCTTCAGAAACGGTGGTGCGACAGCCAGTGGACCAGCTACTGGATTAGCATCCGAATTAAGCCATGTTCTTTCCTAC
TACATTTTAAGGCCTTTGGGCCAATCTACCGGGGACTCATGATTCTTGTACCAATCTTCCATTTTGTAAACTGGCTGTGT
TCTGTAGGTTATTTCTCCTTTATTCCATCATAGTAGCTCATATTTTTCAGGCTGATTCTACATTTCTGGTTGCAACTTAT
CTAATCTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis