Browse Element(s) Details


Os.49683.1.S1_at

Description gb:AK120882.1
DB_XREF= gi:37990505
TID=Os.49683.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49683 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028F01, full insert sequence.
FL= gb:AK120882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3877011/11Serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38720Os.51943.1.S1_at11/115+22636077..22637822Lung seven transmembrane receptor family protein, expressed
LOC_Os05g38730Os.35152.1.S1_at11/115+22642424..22650828SAC3/GANP family protein, expressed
LOC_Os05g38740Os.12348.5.S1_x_at10/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38740Os.12348.5.S1_at9/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38750NANA5+22656487..22656882hypothetical protein
LOC_Os05g38760OsAffx.15015.1.S1_at11/115+22660704..22661267Histone H4, putative
LOC_Os05g38770Os.49683.1.S1_at11/115+22661891..22664464Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g38780OsAffx.19826.2.S1_at11/115+22668358..22669491hypothetical protein
LOC_Os05g38790OsAffx.15016.1.S1_at11/115+22672990..22675464IQ calmodulin-binding motif family protein
LOC_Os05g38800Os.53840.1.S1_at11/115+22675874..22678699PWWP domain containing protein, expressed
LOC_Os05g38810Os.22684.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38810Os.55770.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38820Os.27839.1.S1_at10/115+22686909..22690898CCAAT-binding transcription factor subunit HAP3B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49683.1.S1_at--948--5871Chr05:22662459..22662483 (25 bp)
GAGCGAGTACGCAGCAAAGGCATTG
LOC_Os05g38770
Os.49683.1.S1_at--547--2931Chr05:22662443..22662467 (25 bp)
AAGGCATTGAACCAGGTGGTCGCCA
LOC_Os05g38770
Os.49683.1.S1_at--262--951Chr05:22662397..22662421 (25 bp)
AGGAAGACTCCGTGCGGCCGTTGAT
LOC_Os05g38770
Os.49683.1.S1_at--999--4231Chr05:22662380..22662404 (25 bp)
CCGTTGATGGCCGACGTTGTCATGA
LOC_Os05g38770
Os.49683.1.S1_at--905--871Chr05:22662374..22662398 (25 bp)
ATGGCCGACGTTGTCATGACGCTGG
LOC_Os05g38770
Os.49683.1.S1_at--389--691Chr05:22662359..22662383 (25 bp)
ATGACGCTGGGCTTCCTGACCTCAC
LOC_Os05g38770
Os.49683.1.S1_at--344--2271Chr05:22662272..22662296 (25 bp)
AAATCAGATCACTCTGATAGCTCGT
LOC_Os05g38770
Os.49683.1.S1_at--746--7391Chr05:22661948..22661972 (25 bp)
GTGATAATAACGAACATGCTAAATG
LOC_Os05g38770
Os.49683.1.S1_at--1085--2371Chr05:22661918..22661942 (25 bp)
AAACGTATGGCTTTGTACACTCTGA
LOC_Os05g38770
Os.49683.1.S1_at--284--8311Chr05:22661910..22661934 (25 bp)
GGCTTTGTACACTCTGATCATCAAT
LOC_Os05g38770
Os.49683.1.S1_at--328--9471Chr05:22661898..22661922 (25 bp)
TCTGATCATCAATTGGATACACCCA
LOC_Os05g38770
Target Sequence 
GAGCGAGTACGCAGCAAAGGCATTGAACCAGGTGGTCGCCATGGCCGCGATGTGCTTGCAGGAGGAAGACTCCGTGCGGC
CGTTGATGGCCGACGTTGTCATGACGCTGGGCTTCCTGACCTCACTGCCACCGGGTCCACCAGCTGCCAGCGTCCCAGCC
CCAGCTCCATCTGCCTCCCCTNCACCAAAATCAGATCACTCTGATAGCTCGTNGTCGTCTTCCTCGGACGACGACGACGA
CGACAACGACAACGAAGAAGAGGAAGNGNAGGAAGAGGAGGAAGAAGATGCAGAGGAGCAATAATAAGGGAAACTTTNGT
CAAATGATATTATTGTGGAAGCGAGAAGAAGATCANATGTTAAACGCTTAATTTGAAGGNTCAGGTGATTNAAACCAGAG
NATGNTTTGATGTGGNAAGGNNGTTGTATACCNTGAGTNTATNTTTTTTNNNGTTTCTCAGAGGCCGTGGACAATGTAAA
TTGGGGGGTGGGGCTTCAACAAGTAAATGTTTTTTGTTGTGATAATAACGAACATGCTAAATGGTTTAAAACGTATGGCT
TTGTACACTCTGATCATCAATTGGATACACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis