Browse Element(s) Details


Os.35152.1.S1_at

Description gb:AK068785.1
DB_XREF= gi:32978810
TID=Os.35152.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159K24, full insert sequence.
FL= gb:AK065879.1 gb:AK068785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3873011/11SAC3/GANP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38700OsAffx.27229.1.S1_at11/115+22618262..22619611hypothetical protein
LOC_Os05g38710Os.28320.1.S1_at11/115+22625566..22630697lipin, N-terminal conserved region family protein, expressed
LOC_Os05g38710OsAffx.11471.1.S1_at1/115+22625566..22630697lipin, N-terminal conserved region family protein, expressed
LOC_Os05g38720Os.51943.1.S1_at11/115+22636077..22637822Lung seven transmembrane receptor family protein, expressed
LOC_Os05g38730Os.35152.1.S1_at11/115+22642424..22650828SAC3/GANP family protein, expressed
LOC_Os05g38740Os.12348.5.S1_x_at10/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38740Os.12348.5.S1_at9/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38750NANA5+22656487..22656882hypothetical protein
LOC_Os05g38760OsAffx.15015.1.S1_at11/115+22660704..22661267Histone H4, putative
LOC_Os05g38770Os.49683.1.S1_at11/115+22661891..22664464Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g38780OsAffx.19826.2.S1_at11/115+22668358..22669491hypothetical protein
LOC_Os05g38790OsAffx.15016.1.S1_at11/115+22672990..22675464IQ calmodulin-binding motif family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35152.1.S1_at--844--2011Chr05:22642914..22642938 (25 bp)
ACTACACTTTACATGCCAGAGCCAG
LOC_Os05g38730
Os.35152.1.S1_at--508--3031Chr05:22642887..22642911 (25 bp)
AATGCCGTCGCACATGGTGATGCCT
LOC_Os05g38730
Os.35152.1.S1_at--400--7751Chr05:22642872..22642896 (25 bp)
GGTGATGCCTCACTTGCAGTTAATG
LOC_Os05g38730
Os.35152.1.S1_at--662--1191Chr05:22642855..22642879 (25 bp)
AGTTAATGACTTTTTGGCGCGGACA
LOC_Os05g38730
Os.35152.1.S1_at--616--2851Chr05:22642801..22642825 (25 bp)
AAGTCCAGTATGTTTGTGCCGATCT
LOC_Os05g38730
Os.35152.1.S1_at--77--7391Chr05:22642776..22642800 (25 bp)
GTGAGCCTGTGATGTACTGCAAATG
LOC_Os05g38730
Os.35152.1.S1_at--631--2291Chr05:22642756..22642780 (25 bp)
AAATGTCTCCAGTACACATCGTGCC
LOC_Os05g38730
Os.35152.1.S1_at--835--2871Chr05:22642697..22642721 (25 bp)
AAGGGCATTATGCTTCCGGAGCTTT
LOC_Os05g38730
Os.35152.1.S1_at--26--6031Chr05:22642655..22642679 (25 bp)
GAGAGTGCTGACTACTGAGTGCTCA
LOC_Os05g38730
Os.35152.1.S1_at--754--8871Chr05:22642640..22642664 (25 bp)
TGAGTGCTCAACTTGTTCCCGGGTG
LOC_Os05g38730
Os.35152.1.S1_at--790--7831Chr05:22642475..22642499 (25 bp)
GGTAACCCAGATCCCAGATACATGT
LOC_Os05g38730
Target Sequence 
ACTACACTTTACATGCCAGAGCCAGAGAATGCCGTCGCACATGGTGATGCCTCACTTGCAGTTAATGACTTTTTGGCGCG
GACATAGCGACAAAAATTGTAACCATGATAGATAAGTCCAGTATGTTTGTGCCGATCTGTGAGCCTGTGATGTACTGCAA
ATGTCTCCAGTACACATCGTGCCAGTTATGGAGCTCAATGAAATGGAGCAGCANATGAAGGGCATTATGCTTCCGGAGCT
TTGGAGTTGGAGCAAATAGGAGAGTGCTGACTACTGAGTGCTCAACTTGTTCCCGGGTGTTTGCACCTGATGCAACAACT
GCAATGCTCAATGCAACGGTGAGGCATATACTGGACAACACATCCAAAACGANAAGCCTGCAGAAAGCTTTGCCGCTGGC
CTGTGGTCTCACAGAAACACAGAAAATGTATGAACTTCTGGTAACCCAGATCCCAGATACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis