Browse Element(s) Details


OsAffx.27229.1.S1_at

Description tigr:9633.m03595
TID=OsAffx.27229.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3870011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38680OsAffx.15014.1.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g38680Os.28394.2.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g38690OsAffx.27228.1.S1_at11/115+22615360..22616469expressed protein
LOC_Os05g38700OsAffx.27229.1.S1_at11/115+22618262..22619611hypothetical protein
LOC_Os05g38710Os.28320.1.S1_at11/115+22625566..22630697lipin, N-terminal conserved region family protein, expressed
LOC_Os05g38710OsAffx.11471.1.S1_at1/115+22625566..22630697lipin, N-terminal conserved region family protein, expressed
LOC_Os05g38720Os.51943.1.S1_at11/115+22636077..22637822Lung seven transmembrane receptor family protein, expressed
LOC_Os05g38730Os.35152.1.S1_at11/115+22642424..22650828SAC3/GANP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27229.1.S1_at--80--7871Chr05:22619025..22619049 (25 bp)
GGTATAGGGTGTTCCTACGGCCTAT
LOC_Os05g38700
OsAffx.27229.1.S1_at--1064--6691Chr05:22619015..22619039 (25 bp)
GTTCCTACGGCCTATGTGGAGTAAT
LOC_Os05g38700
OsAffx.27229.1.S1_at--286--2651Chr05:22618982..22619006 (25 bp)
AAGTCCATGGGAACACACGAAAGTC
LOC_Os05g38700
OsAffx.27229.1.S1_at--132--2331Chr05:22618963..22618987 (25 bp)
AAAGTCAAGGCCCTGTATCACCATG
LOC_Os05g38700
OsAffx.27229.1.S1_at--877--6891Chr05:22618949..22618973 (25 bp)
GTATCACCATGACACCATCGGAGAG
LOC_Os05g38700
OsAffx.27229.1.S1_at--471--5511Chr05:22618912..22618936 (25 bp)
GAAAATTCTTTTATGCGTGTATGCT
LOC_Os05g38700
OsAffx.27229.1.S1_at--873--10131Chr05:22618901..22618925 (25 bp)
TATGCGTGTATGCTGTACTTTGGCT
LOC_Os05g38700
OsAffx.27229.1.S1_at--300--3651Chr05:22618884..22618908 (25 bp)
CTTTGGCTGGCCAGGTTGAGTACTT
LOC_Os05g38700
OsAffx.27229.1.S1_at--874--8891Chr05:22618868..22618892 (25 bp)
TGAGTACTTCTTCGCCGAAATTCAC
LOC_Os05g38700
OsAffx.27229.1.S1_at--105--4891Chr05:22618842..22618866 (25 bp)
GCTTTGCCAAATTTCTCACCAACAT
LOC_Os05g38700
OsAffx.27229.1.S1_at--596--7811Chr05:22618301..22618320 (20 bp)
TCGTAAGTTTTACCTCAATCCCTTG
LOC_Os05g38700
Target Sequence 
GGTATAGGGTGTTCCTACGGCCTATGTGGAGTAATAATAGAGGAAGTCCATGGGAACACACGAAAGTCAAGGCCCTGTAT
CACCATGACACCATCGGAGAGAAAAAAGAAAAAGAAAATTCTTTTATGCGTGTATGCTGTACTTTGGCTGGCCAGGTTGA
GTACTTCTTCGCCGAAATTCACGGCTTTGCCAAATTTCTCACCAACATCAACATCATTCGTAAGTTTTACCTCAATCCCT
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis