Browse Element(s) Details


Os.28394.2.S1_s_at

Description gb:AK059029.1
DB_XREF= gi:32969047
TID=Os.28394.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-C01, full insert sequence.
FL= gb:AK059029.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3868011/11uncharacterized plant-specific domain TIGR01589 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38640Os.9745.1.S1_at11/115+22573654..22574824Histone H2A, putative, expressed
LOC_Os05g38650OsAffx.15012.1.S1_x_at11/115+22578592..22579023hypothetical protein
LOC_Os05g38660Os.55283.1.S1_at11/115+22582154..22582816expressed protein
LOC_Os05g38670OsAffx.15013.1.S1_at11/115+22587742..22591452cation efflux family protein
LOC_Os05g38680OsAffx.15014.1.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g38680Os.28394.2.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g38690OsAffx.27228.1.S1_at11/115+22615360..22616469expressed protein
LOC_Os05g38700OsAffx.27229.1.S1_at11/115+22618262..22619611hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28394.2.S1_s_at--106--9851Chr05:22595018..22595042 (25 bp)
TAAATGTGCCGTAAGCATGCATCAT
LOC_Os05g38680
Os.28394.2.S1_s_at--869--8691Chr05:22595014..22595038 (25 bp)
TGTGCCGTAAGCATGCATCATATAT
LOC_Os05g38680
Os.28394.2.S1_s_at--112--4511Chr05:22595011..22595035 (25 bp)
GCCGTAAGCATGCATCATATATAGA
LOC_Os05g38680
Os.28394.2.S1_s_at--1021--9591Chr05:22594997..22595021 (25 bp)
TCATATATAGATTAGCTAGCCAGCT
LOC_Os05g38680
Os.28394.2.S1_s_at--660--3071Chr05:22594956..22594980 (25 bp)
AATCATGAACATGTAGTTGTGTGTA
LOC_Os05g38680
Os.28394.2.S1_s_at--415--10051Chr05:22594943..22594967 (25 bp)
TAGTTGTGTGTAGTATGTTATTAGC
LOC_Os05g38680
Os.28394.2.S1_s_at--735--7431Chr05:22594936..22594960 (25 bp)
GTGTAGTATGTTATTAGCACAAGAA
LOC_Os05g38680
Os.28394.2.S1_s_at--459--3211Chr05:22594917..22594941 (25 bp)
CAAGAAATCATGTACTAGGTGTCAT
LOC_Os05g38680
Os.28394.2.S1_s_at--66--3711Chr05:22594903..22594927 (25 bp)
CTAGGTGTCATGTACTGTTTAGTAT
LOC_Os05g38680
Os.28394.2.S1_s_at--1120--5131Chr05:22594859..22594883 (25 bp)
GCAAACATGAATGCATGCGTGGAAT
LOC_Os05g38680
Os.28394.2.S1_s_at--261--631Chr05:22594849..22594873 (25 bp)
ATGCATGCGTGGAATATTCAGGATA
LOC_Os05g38680
Target Sequence 
TAAATGTGCCGTAAGCATGCATCATATATAGATTAGCTAGCCAGCTAGCTGCCACAAAATTAAATCATGAACATGTAGTT
GTGTGTAGTATGTTATTAGCACAAGAAATCATGTACTAGGTGTCATGTACTGTTTAGTATATATGTGCATCTTATGTATG
CAAACATGAATGCATGCGTGGAATATTCAGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28394.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis