Browse Element(s) Details


Os.9745.1.S1_at

Description gb:AK067406.1
DB_XREF= gi:32977424
TID=Os.9745.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013094K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099N23, full insert sequence.
FL= gb:AK067406.1 gb:AK099763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3864011/11Histone H2A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38580Os.49443.1.S1_at11/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38580Os.18980.1.A1_at1/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38590Os.52317.1.S1_at11/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38590Os.17700.1.S1_x_at9/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38600OsAffx.15010.1.S1_at11/115+22555310..22555834Zinc finger, C2H2 type family protein
LOC_Os05g38610Os.3438.1.S1_at10/115+22558442..22561195Clathrin adaptor complex small chain family protein, expressed
LOC_Os05g38620OsAffx.15011.1.S1_at11/115+22565231..22565851Zinc finger, C2H2 type family protein
LOC_Os05g38630Os.11088.1.S1_at11/115+22566108..22569323Ras-related protein ARA-3, putative, expressed
LOC_Os05g38640Os.9745.1.S1_at11/115+22573654..22574824Histone H2A, putative, expressed
LOC_Os05g38650OsAffx.15012.1.S1_x_at11/115+22578592..22579023hypothetical protein
LOC_Os05g38660Os.55283.1.S1_at11/115+22582154..22582816expressed protein
LOC_Os05g38670OsAffx.15013.1.S1_at11/115+22587742..22591452cation efflux family protein
LOC_Os05g38680OsAffx.15014.1.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g38680Os.28394.2.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9745.1.S1_at--394--10451Chr05:22574167..22574191 (25 bp)
TTAGGGCACACGCAATGCCGGCTTG
LOC_Os05g38640
Os.9745.1.S1_at--1114--411Chr05:22574070..22574094 (25 bp)
ATCATCGTCTTCGTTGCATGCTATA
LOC_Os05g38640
Os.9745.1.S1_at--23--10171Chr05:22574047..22574071 (25 bp)
TATCATTTGTCGTGAATCGGTTCGG
LOC_Os05g38640
Os.9745.1.S1_at--943--8971Chr05:22574035..22574059 (25 bp)
TGAATCGGTTCGGTTGTTTGTACGT
LOC_Os05g38640
Os.9745.1.S1_at--686--2651Chr05:22573977..22574001 (25 bp)
AAGCCAATCAGTTTGTACCCGTGTA
LOC_Os05g38640
Os.9745.1.S1_at--637--7351Chr05:22573896..22573920 (25 bp)
GTGAATTGTTAGATGCTGCCTGTAA
LOC_Os05g38640
Os.9745.1.S1_at--529--7971Chr05:22573819..22573843 (25 bp)
GGATGCACATATATGCCTCCTGGTG
LOC_Os05g38640
Os.9745.1.S1_at--180--9271Chr05:22573802..22573826 (25 bp)
TCCTGGTGGGTTATTTGGTTCTTCG
LOC_Os05g38640
Os.9745.1.S1_at--39--7631Chr05:22573720..22573744 (25 bp)
GGGAAATGCTGTTTCTCATGTTATG
LOC_Os05g38640
Os.9745.1.S1_at--282--9531Chr05:22573707..22573731 (25 bp)
TCTCATGTTATGTAGTGGCACTTTT
LOC_Os05g38640
Os.9745.1.S1_at--274--7531Chr05:22573693..22573717 (25 bp)
GTGGCACTTTTTAGCTTGATATCAT
LOC_Os05g38640
Target Sequence 
TTAGGGCACACGCAATGCCGGCTTGGTGGTGGTGTCCCCCGCTTCCCTCTCCCTCTTGTCTGANCTGAAACGCTCCTANC
TGTTGTCAATCGTCATCATCATCGTCTTCGTTGCATGCTATATCATTTGTCGTGAATCGGTTCGGTTGTTTGTACGTAAT
TTGTGGTGTTTTCTGAATAGATGGACAGTCAAGCCAATCAGTTTGTACCCGTGTAGGTTAACACCGGTGTAGGGTCGAGG
AGTGTGGTCTGGGCAGAGGGATGGGGGAACTGTGAATTGTTAGATGCTGCCTGTAATAATATTGTTAAGATTTGGATAAT
TTCGAACAATTGATCTGTGTTTGGTAGTGGATGCACATATATGCCTCCTGGTGGGTTATTTGGTTCTTCGTTTGTGTTTG
GGTAATTATTGAAAATAGCATTGCCATTTGGGGTGCTTGGGTGGTTGGGGAAATGCTGTTTCTCATGTTATGTAGTGGCA
CTTTTTAGCTTGATATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis