Browse Element(s) Details


Os.3438.1.S1_at

Description gb:AB042259.1
DB_XREF= gi:7678765
GEN=copz1
TID=Os.3438.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3438 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) copz1 mRNA for zeta1-COP, complete cds.
PROD=zeta1-COP
FL= gb:AB042259.1 gb:AK059189.1 gb:AK099044.1 gb:AK104166.1 gb:AK066739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3861010/11Clathrin adaptor complex small chain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38550Os.37932.1.A1_x_at11/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38550Os.12586.1.S1_at10/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38560OsAffx.27227.1.S1_at11/115+22541931..22542431Histone H2B, putative
LOC_Os05g38560OsAffx.10929.1.S1_x_at1/115+22541931..22542431Histone H2B, putative
LOC_Os05g38570Os.52526.1.S1_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.7480.1.S1_x_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.52655.2.S1_at1/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38580Os.49443.1.S1_at11/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38580Os.18980.1.A1_at1/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38590Os.52317.1.S1_at11/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38590Os.17700.1.S1_x_at9/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38600OsAffx.15010.1.S1_at11/115+22555310..22555834Zinc finger, C2H2 type family protein
LOC_Os05g38610Os.3438.1.S1_at10/115+22558442..22561195Clathrin adaptor complex small chain family protein, expressed
LOC_Os05g38620OsAffx.15011.1.S1_at11/115+22565231..22565851Zinc finger, C2H2 type family protein
LOC_Os05g38630Os.11088.1.S1_at11/115+22566108..22569323Ras-related protein ARA-3, putative, expressed
LOC_Os05g38640Os.9745.1.S1_at11/115+22573654..22574824Histone H2A, putative, expressed
LOC_Os05g38650OsAffx.15012.1.S1_x_at11/115+22578592..22579023hypothetical protein
LOC_Os05g38660Os.55283.1.S1_at11/115+22582154..22582816expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3438.1.S1_at--1147--331Chr05:22559703..22559727 (25 bp)
ATAAGTTCATCCAAGACCTCCATTT
LOC_Os05g38610
Os.3438.1.S1_at--529--4871Chr05:22559648..22559672 (25 bp)
GCTTATTTTAGCATCGGTCCTTCAA
LOC_Os05g38610
Os.3438.1.S1_at--1083--8551Chr05:22559446..22559470 (25 bp)
TGGATCTCATCCTATTGTGCCTCGA
LOC_Os05g38610
Os.3438.1.S1_at--316--10031Chr05:22558938..22558962 (25 bp)
TAGAAGGTGCTACTTCACTCGCTGA
LOC_Os05g38610
Os.3438.1.S1_at--490--5931Chr05:22558836..22558858 (23 bp)
GAGCAGACTATAGTTCAAGCCCTAA
LOC_Os05g38610
Os.3438.1.S1_at--139--9531Chr05:22558785..22558809 (25 bp)
TCTCTTCTTATGTGATGTGCTCTGC
LOC_Os05g38610
Os.3438.1.S1_at--586--831Chr05:22558746..22558770 (25 bp)
ATGGAGTAGCATCCCGTTGTTACAT
LOC_Os05g38610
Os.3438.1.S1_at--1073--4191Chr05:22558734..22558758 (25 bp)
CCCGTTGTTACATCTCTAGGACTGA
LOC_Os05g38610
Os.3438.1.S1_at--531--5231Chr05:22558679..22558703 (25 bp)
GAATATCTGAATCCATTTGCGTGTA
LOC_Os05g38610
Os.3438.1.S1_at--254--10711Chr05:22558663..22558687 (25 bp)
TTGCGTGTAGAGTGGCACGTTCCCT
LOC_Os05g38610
Os.3438.1.S1_at--1013--2171NONE
ACACTATCTGGGTTCAGTTTTGCGA
NONE
Target Sequence 
ATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAA
GGATTCACTGATGCAGTTGACATTATTCTCAGAAATAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCATCCT
ATTGTGCCTCGATGAAATTGTTGATGGAGGGNATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCA
CATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAA
ATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCATCCCGTTGTTACATCTCTAGGACTGATAC
GTTCATTGCAATAGAAACGACGGAACAGAATATCTGAATCCATTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTA
TCTGGGTTCAGTTTTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis