Browse Element(s) Details


Os.37932.1.A1_x_at

Description gb:AK102646.1
DB_XREF= gi:32987855
TID=Os.37932.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033100I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033100I12, full insert sequence.
FL= gb:AK102646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3855011/11Ubiquitin-conjugating enzyme E2 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38510OsAffx.27226.1.S1_at11/115+22510059..22512985hypothetical protein
LOC_Os05g38520Os.9260.1.S1_at11/115+22513239..2251530060S ribosomal protein L36-2, putative, expressed
LOC_Os05g38520Os.57302.1.S1_at11/115+22513239..2251530060S ribosomal protein L36-2, putative, expressed
LOC_Os05g38530Os.38581.1.S1_s_at11/115+22516184..22519363Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38530Os.57477.1.S1_x_at1/115+22516184..22519363Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38540OsAffx.13097.1.S1_s_at11/115+22527206..22531921transposon protein, putative, Mutator sub-class
LOC_Os05g38550Os.37932.1.A1_x_at11/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38550Os.12586.1.S1_at10/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38560OsAffx.27227.1.S1_at11/115+22541931..22542431Histone H2B, putative
LOC_Os05g38560OsAffx.10929.1.S1_x_at1/115+22541931..22542431Histone H2B, putative
LOC_Os05g38570Os.52526.1.S1_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.7480.1.S1_x_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.52655.2.S1_at1/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38580Os.49443.1.S1_at11/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38580Os.18980.1.A1_at1/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38590Os.52317.1.S1_at11/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38590Os.17700.1.S1_x_at9/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38600OsAffx.15010.1.S1_at11/115+22555310..22555834Zinc finger, C2H2 type family protein
LOC_Os05g38610Os.3438.1.S1_at10/115+22558442..22561195Clathrin adaptor complex small chain family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009650biological_processUV protection
GO:0005622cellular_componentintracellular
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37932.1.A1_x_at--349--4911Chr05:22535457..22535481 (25 bp)
GCTTGCGAGCGAACGGTGGACACCT
LOC_Os05g38550
Os.37932.1.A1_x_at--73--6111Chr05:22536063..22536087 (25 bp)
GAGTCTCCAGCAAATATTGAAGCGG
LOC_Os05g38550
Os.37932.1.A1_x_at--578--5791Chr05:22536581..22536605 (25 bp)
GACGCATTGTTCGTAAATCACAGGA
LOC_Os05g38550
Os.37932.1.A1_x_at--422--7771Chr05:22536657..22536681 (25 bp)
GGTGCACTACACTTAACTGTCTGTC
LOC_Os05g38550
Os.37932.1.A1_x_at--1062--3311Chr05:22536666..22536690 (25 bp)
CACTTAACTGTCTGTCGTCAAACGA
LOC_Os05g38550
Os.37932.1.A1_x_at--168--1272Chr05:22536699..22536723 (25 bp)
AGATAGCATTTTTGCTTCTTCCCCT
LOC_Os05g38550
Os.37932.1.A1_x_at--1112--6271Chr05:22536756..22536780 (25 bp)
GATGTTGGTCTTGTCTCCGAGATGC
LOC_Os05g38550
Os.37932.1.A1_x_at--482--10771Chr05:22536817..22536841 (25 bp)
TTGTGTGGCATGGAGTGTCAACGTT
LOC_Os05g38550
Os.37932.1.A1_x_at--478--2371Chr05:22536904..22536928 (25 bp)
AAACCTAGTTTCACATATCTGTTGG
LOC_Os05g38550
Os.37932.1.A1_x_at--766--251Chr05:22536918..22536942 (25 bp)
ATATCTGTTGGCTTACTGCAGCAGC
LOC_Os05g38550
Os.37932.1.A1_x_at--72--4271Chr05:22536943..22536967 (25 bp)
CCGGAATGCCATCTCGTTGTGAGTA
LOC_Os05g38550
Target Sequence 
GCTTGCGAGCGAACGGTGGACACCTGTGCATACNNTNNAAAGTATANTTCTGAGCATNCATTTCGATGCTCTCTAGTCCN
AAATGATGAGTCTCCAGCAAATATTGAAGCGGCTAAGGATTGGAGAGAAAAGAGGGACGATTTCAAGAAAAAGGTTAGAC
GCATTGTTCGTAAATCACAGGAAATGCTCTGAAAGATAAGGAGCACAAGGGGGAGTAAGCGAGTGCTACAACAGGTGCAC
TACACTTAACTGTCTGTCGTCAAACGACTACCTAAAGATAGCATTTTTGCTTCTTCCCCTGTATATTTCCCCCTCAGTGT
CATTCGAGTGGTGATGTTGGTCTTGTCTCCGAGATGCTCGGAAATGTTGCCTATTCTAGAAATTTCGATTGTATTGTGTG
GCATGGAGTGTCAACGTTGAGGAATATTTTGGAATGCTGCCAATTAGTCATAATTGTCGTAATGAACTTTTCATAACAGA
AAACCTAGTTTCACATATCTGTTGGCTTACTGCAGCAGCCCGGAATGCCATCTCGTTGTGAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37932.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis