Browse Element(s) Details

Os.52526.1.S1_at

Description

gb:AK067655.1
DB_XREF= gi:32977673
TID=Os.52526.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116D09, full insert sequence.
FL= gb:AK067655.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os05g38570	11/11	Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os05g38530	Os.38581.1.S1_s_at	11/11	5	+	22516184..22519363	Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38530	Os.57477.1.S1_x_at	1/11	5	+	22516184..22519363	Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38540	OsAffx.13097.1.S1_s_at	11/11	5	+	22527206..22531921	transposon protein, putative, Mutator sub-class
LOC_Os05g38550	Os.37932.1.A1_x_at	11/11	5	+	22532672..22537121	Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38550	Os.12586.1.S1_at	10/11	5	+	22532672..22537121	Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38560	OsAffx.27227.1.S1_at	11/11	5	+	22541931..22542431	Histone H2B, putative
LOC_Os05g38560	OsAffx.10929.1.S1_x_at	1/11	5	+	22541931..22542431	Histone H2B, putative
LOC_Os05g38570	Os.52526.1.S1_at	11/11	5	+	22542483..22545844	Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570	Os.7480.1.S1_x_at	11/11	5	+	22542483..22545844	Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570	Os.52655.2.S1_at	1/11	5	+	22542483..22545844	Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38580	Os.49443.1.S1_at	11/11	5	+	22547125..22549302	ribosomal protein L17 containing protein, expressed
LOC_Os05g38580	Os.18980.1.A1_at	1/11	5	+	22547125..22549302	ribosomal protein L17 containing protein, expressed
LOC_Os05g38590	Os.52317.1.S1_at	11/11	5	+	22549969..22552940	Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38590	Os.17700.1.S1_x_at	9/11	5	+	22549969..22552940	Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38600	OsAffx.15010.1.S1_at	11/11	5	+	22555310..22555834	Zinc finger, C2H2 type family protein
LOC_Os05g38610	Os.3438.1.S1_at	10/11	5	+	22558442..22561195	Clathrin adaptor complex small chain family protein, expressed
LOC_Os05g38620	OsAffx.15011.1.S1_at	11/11	5	+	22565231..22565851	Zinc finger, C2H2 type family protein
LOC_Os05g38630	Os.11088.1.S1_at	11/11	5	+	22566108..22569323	Ras-related protein ARA-3, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009231	biological_process	riboflavin biosynthesis
GO:0003935	molecular_function	GTP cyclohydrolase II activity
GO:0008686	molecular_function	3,4-dihydroxy-2-butanone-4-phosphate synthase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52526.1.S1_at--423--945	1	Chr05:22542937..22542961 (25 bp)	TCGGCGCCCAGGTAGTGCACCGACA	LOC_Os05g38570
Os.52526.1.S1_at--44--457	1	Chr05:22542934..22542958 (25 bp)	GCGCCCAGGTAGTGCACCGACATCA	LOC_Os05g38570
Os.52526.1.S1_at--222--509	1	Chr05:22542921..22542945 (25 bp)	GCACCGACATCAACCATGGCGCATT	LOC_Os05g38570
Os.52526.1.S1_at--122--179	1	Chr05:22542919..22542943 (25 bp)	ACCGACATCAACCATGGCGCATTCT	LOC_Os05g38570
Os.52526.1.S1_at--128--411	1	Chr05:22542917..22542941 (25 bp)	CGACATCAACCATGGCGCATTCTGA	LOC_Os05g38570
Os.52526.1.S1_at--501--567	1	Chr05:22542916..22542940 (25 bp)	GACATCAACCATGGCGCATTCTGAA	LOC_Os05g38570
Os.52526.1.S1_at--1064--971	1	Chr05:22542912..22542936 (25 bp)	TCAACCATGGCGCATTCTGAATTCA	LOC_Os05g38570
Os.52526.1.S1_at--571--325	1	Chr05:22542911..22542935 (25 bp)	CAACCATGGCGCATTCTGAATTCAA	LOC_Os05g38570
Os.52526.1.S1_at--136--265	1	Chr05:22542910..22542934 (25 bp)	AACCATGGCGCATTCTGAATTCAAT	LOC_Os05g38570
Os.52526.1.S1_at--32--173	1	Chr05:22542909..22542933 (25 bp)	ACCATGGCGCATTCTGAATTCAATT	LOC_Os05g38570
Os.52526.1.S1_at--906--433	1	Chr05:22542908..22542932 (25 bp)	CCATGGCGCATTCTGAATTCAATTT	LOC_Os05g38570

Target Sequence

TCGGCGCCCAGGTAGTGCACCGACATCAACCATGGCGCATTCTGAATTCAATTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis