Browse Element(s) Details


OsAffx.15010.1.S1_at

Description tigr:9633.m03585
TID=OsAffx.15010.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C2H2 type, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3860011/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38540OsAffx.13097.1.S1_s_at11/115+22527206..22531921transposon protein, putative, Mutator sub-class
LOC_Os05g38550Os.37932.1.A1_x_at11/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38550Os.12586.1.S1_at10/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38560OsAffx.27227.1.S1_at11/115+22541931..22542431Histone H2B, putative
LOC_Os05g38560OsAffx.10929.1.S1_x_at1/115+22541931..22542431Histone H2B, putative
LOC_Os05g38570Os.52526.1.S1_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.7480.1.S1_x_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.52655.2.S1_at1/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38580Os.49443.1.S1_at11/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38580Os.18980.1.A1_at1/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38590Os.52317.1.S1_at11/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38590Os.17700.1.S1_x_at9/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38600OsAffx.15010.1.S1_at11/115+22555310..22555834Zinc finger, C2H2 type family protein
LOC_Os05g38610Os.3438.1.S1_at10/115+22558442..22561195Clathrin adaptor complex small chain family protein, expressed
LOC_Os05g38620OsAffx.15011.1.S1_at11/115+22565231..22565851Zinc finger, C2H2 type family protein
LOC_Os05g38630Os.11088.1.S1_at11/115+22566108..22569323Ras-related protein ARA-3, putative, expressed
LOC_Os05g38640Os.9745.1.S1_at11/115+22573654..22574824Histone H2A, putative, expressed
LOC_Os05g38650OsAffx.15012.1.S1_x_at11/115+22578592..22579023hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
GO:0009409biological_processresponse to cold
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009631biological_processcold acclimation
GO:0009643biological_processphotosynthetic acclimation
GO:0010200biological_processresponse to chitin
GO:0042538biological_processhyperosmotic salinity response
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15010.1.S1_at--259--7631Chr05:22555780..22555804 (25 bp)
GGGAGCGGTGGCCTCCGCCCGACGA
LOC_Os05g38600
OsAffx.15010.1.S1_at--917--8011Chr05:22555721..22555745 (25 bp)
GGAGTATTTCAGGTGCAAGACGTGC
LOC_Os05g38600
OsAffx.15010.1.S1_at--1090--7191Chr05:22555594..22555618 (25 bp)
GTCGTGGGGGCTACCAACAACCAGC
LOC_Os05g38600
OsAffx.15010.1.S1_at--370--8351Chr05:22555569..22555593 (25 bp)
GGCGGGTGGTTTCCGCCCACCAGTG
LOC_Os05g38600
OsAffx.15010.1.S1_at--92--8711Chr05:22555413..22555437 (25 bp)
TGTCCAGCATGGAGCCGCCGGAGAT
LOC_Os05g38600
OsAffx.15010.1.S1_at--757--4211Chr05:22555399..22555423 (25 bp)
CCGCCGGAGATGATCGACTTGAACA
LOC_Os05g38600
OsAffx.15010.1.S1_at--1039--3951Chr05:22555395..22555419 (25 bp)
CGGAGATGATCGACTTGAACAGCCC
LOC_Os05g38600
OsAffx.15010.1.S1_at--233--1311Chr05:22555392..22555416 (25 bp)
AGATGATCGACTTGAACAGCCCGCC
LOC_Os05g38600
OsAffx.15010.1.S1_at--1060--691Chr05:22555390..22555414 (25 bp)
ATGATCGACTTGAACAGCCCGCCGG
LOC_Os05g38600
OsAffx.15010.1.S1_at--1133--511Chr05:22555387..22555411 (25 bp)
ATCGACTTGAACAGCCCGCCGGCGG
LOC_Os05g38600
OsAffx.15010.1.S1_at--565--4251Chr05:22555353..22555377 (25 bp)
CCGGTGAAGGTGATCAGGAGGTTGA
LOC_Os05g38600
Target Sequence 
GGGAGCGGTGGCCTCCGCCCGACGACGCACGTCGCGGGCGGCGGCGGGAGCGCGCGCGGGGAGTATTTCAGGTGCAAGAC
GTGCAGCAAGACGTTCACGTCGTTCCAGGCGCTCGGCGGGCACCGGACGGGGCACACGCGGATGGCGGCGCGGCAGCGGC
AGGAGCACGGCGCCGCGGGGGCCGCCGTCGTGGGGGCTACCAACAACCAGCGGCGGGTGGTTTCCGCCCACCAGTGGCAC
CTGTGCGCCGTGTGCGGGGTCGAGTTCCGCATGGGGCAGGCGCTCGGCGGGCACATGCGGCGGCACAGAGGCGAGGCGGC
AGCGGCGACGCCGCCGCCGGCGGCTGCGGCTGCGAGCGCCGGCGCCGTGTCCAGCATGGAGCCGCCGGAGATGATCGACT
TGAACAGCCCGCCGGCGGTCGAGGAGGCCGGTGAAGGTGATCAGGAGGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis