Browse Element(s) Details


OsAffx.10929.1.S1_x_at

Description tigr:9629.m00523
TID=OsAffx.10929.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Core histone H2AH2BH3H4, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0597011/11Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os01g056307/11Histone H2B.2, putative, expressed
LOC_Os01g056107/11Histone H2B.2, putative, expressed
LOC_Os01g059907/11Histone H2B, putative, expressed
LOC_Os01g059006/11Histone H2B.2, putative, expressed
LOC_Os01g059506/11Histone H2B.3, putative, expressed
LOC_Os01g060106/11Histone H2B, putative, expressed
LOC_Os03g170843/11Core histone H2A/H2B/H3/H4 family protein
LOC_Os05g498602/11Histone H2B, putative, expressed
LOC_Os08g383002/11Histone H2B, putative, expressed
LOC_Os03g394001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g059901/11expressed protein
LOC_Os05g385601/11Histone H2B, putative
LOC_Os05g441101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05900Os.19803.5.S1_at11/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05900OsAffx.10929.1.S1_x_at6/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05910OsAffx.23128.1.S1_at10/111+2819284..2820179hypothetical protein
LOC_Os01g05920OsAffx.27060.1.S1_at11/111+2821821..2822267hypothetical protein
LOC_Os01g05930Os.45357.1.S1_at11/111+2822918..2825732SWIM zinc finger family protein, expressed
LOC_Os01g05940OsAffx.22770.2.S1_x_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.4.S1_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.3.S1_x_at2/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.1.S1_x_at1/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05950Os.19803.2.S1_at11/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05950OsAffx.10929.1.S1_x_at6/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05960Os.32822.1.S1_at11/111+2836736..2840314Leucine Rich Repeat family protein, expressed
LOC_Os01g05970OsAffx.10929.1.S1_x_at11/111+2841231..2845914Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os01g05980OsAffx.22770.1.S1_x_at11/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05980OsAffx.22770.3.S1_x_at1/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05990Os.19803.3.S1_at11/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g05990OsAffx.10929.1.S1_x_at7/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g06000OsAffx.10931.1.S1_at11/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.10931.3.S1_at2/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.24723.1.S1_at1/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06010Os.47037.1.S1_at11/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06010OsAffx.10929.1.S1_x_at6/111+2868925..2869667Histone H2B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10929.1.S1_x_at--672--10251Chr01:2842031..2842055 (25 bp)
TTTTACCCACTATAAACTCACCGCA
LOC_Os01g05970
OsAffx.10929.1.S1_x_at--636--5191Chr01:2841985..2842009 (25 bp)
GCAATCTCGCAACACATCAGCACAC
LOC_Os01g05970
OsAffx.10929.1.S1_x_at--416--10652Chr01:2841930..2841954 (25 bp)
TTCCCCTCCCCGAGAAGAAGAGAGA
LOC_Os01g05970
OsAffx.10929.1.S1_x_at--1149--5352Chr05:28528741..28528769 (25 bp)
GAAGAGAGAAGCATCCATGGCGCCC
LOC_Os05g49860
OsAffx.10929.1.S1_x_at--370--27510Chr05:28528794..28528818 (25 bp)
AAGAAGCCCGCGGAGGAGGAGCCCG
LOC_Os05g49860
OsAffx.10929.1.S1_x_at--199--27512Chr08:24128739..24128763 (25 bp)
AAGAAGAGCGTCGAGACCTACAAGA
LOC_Os08g38300
OsAffx.10929.1.S1_x_at--1143--58711Chr03:9472120..9472144 (25 bp)
GAGCGTCGAGACCTACAAGATCTAC
LOC_Os03g17084
OsAffx.10929.1.S1_x_at--775--72113Chr03:9472124..9472148 (25 bp)
GTCGAGACCTACAAGATCTACATCT
LOC_Os03g17084
OsAffx.10929.1.S1_x_at--575--98516Chr06:822399..822421 (23 bp)
TACAAGATCTACATCTTCAAGGTGC
NONE
OsAffx.10929.1.S1_x_at--940--3539Chr08:24128768..24128791 (24 bp)
CATCTTCAAGGTGCTCAAGCAGGTT
LOC_Os08g38300
OsAffx.10929.1.S1_x_at--292--9733Chr01:2683815..2683839 (25 bp)
TCAAGGTGCTCAAGCAGGTTCACCC
LOC_Os01g05630
Target Sequence 
TTTTACCCACTATAAACTCACCGCACCCGTGTCCTCCTTCCACACCGCAATCTCGCAACACATCAGCACACACCGCTCCA
AAGCAAAACCCACGGACCCGCTTCCCCTCCCCGAGAAGAAGAGAGAAGCATCCATGGCGCCCAAGGCGGAGAAGAAGCCG
GCCGCGAAGAAGCCCGCGGAGGAGGAGCCCGCGGCAGAGAAGGCCGAGAAGGCCCCCGCGGGGAAGAAGCCCAAGGCGGA
GAAGCGTCTCCCCGCCGGCAAGGGCGAGAAGGGCAGCGGCGAGGGGAAGAAGGCGGGGCGGAAGAAGGGGAAGAAGAGCG
TCGAGACCTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTTCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10929.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis