Browse Element(s) Details


Os.32822.1.S1_at

Description gb:AK102745.1
DB_XREF= gi:32987954
TID=Os.32822.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase Xa21 (P0009G03.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106J03, full insert sequence.
FL= gb:AK102745.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0596011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05870Os.32577.1.S1_at11/111+2807115..2811819Leucine Rich Repeat family protein, expressed
LOC_Os01g05880OsAffx.10926.1.S1_at11/111+2811977..2813203F-box domain containing protein, expressed
LOC_Os01g05890OsAffx.22772.1.S1_at11/111+2814452..2815699F-box domain containing protein
LOC_Os01g05900Os.19803.5.S1_at11/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05900OsAffx.10929.1.S1_x_at6/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05910OsAffx.23128.1.S1_at10/111+2819284..2820179hypothetical protein
LOC_Os01g05920OsAffx.27060.1.S1_at11/111+2821821..2822267hypothetical protein
LOC_Os01g05930Os.45357.1.S1_at11/111+2822918..2825732SWIM zinc finger family protein, expressed
LOC_Os01g05940OsAffx.22770.2.S1_x_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.4.S1_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.3.S1_x_at2/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.1.S1_x_at1/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05950Os.19803.2.S1_at11/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05950OsAffx.10929.1.S1_x_at6/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05960Os.32822.1.S1_at11/111+2836736..2840314Leucine Rich Repeat family protein, expressed
LOC_Os01g05970OsAffx.10929.1.S1_x_at11/111+2841231..2845914Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os01g05980OsAffx.22770.1.S1_x_at11/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05980OsAffx.22770.3.S1_x_at1/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05990Os.19803.3.S1_at11/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g05990OsAffx.10929.1.S1_x_at7/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g06000OsAffx.10931.1.S1_at11/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.10931.3.S1_at2/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.24723.1.S1_at1/111+2857419..2864074pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32822.1.S1_at--77--1151Chr01:2839718..2839742 (25 bp)
AGTCTCCAGACTAGGTGATATTTAC
LOC_Os01g05960
Os.32822.1.S1_at--179--10411Chr01:2839755..2839779 (25 bp)
TTATTGCTTGAGATATTTACCGGAA
LOC_Os01g05960
Os.32822.1.S1_at--576--3211Chr01:2839802..2839826 (25 bp)
CAAGGATTCGGTGGATCTGCACAAA
LOC_Os01g05960
Os.32822.1.S1_at--538--211Chr01:2839826..2839850 (25 bp)
ATTTGCATCAGCAGCATTTCCTGGC
LOC_Os01g05960
Os.32822.1.S1_at--535--171Chr01:2839841..2839865 (25 bp)
ATTTCCTGGCCGAGTCCTAGATATA
LOC_Os01g05960
Os.32822.1.S1_at--647--3231Chr01:2839944..2839968 (25 bp)
CAAGACTGCTTGGTTTCTGTCCTTA
LOC_Os01g05960
Os.32822.1.S1_at--1068--7851Chr01:2839955..2839979 (25 bp)
GGTTTCTGTCCTTAGACTTGGCATA
LOC_Os01g05960
Os.32822.1.S1_at--555--5231Chr01:2840055..2840079 (25 bp)
GAATATCTTCTGTCTCAGGTGGTTA
LOC_Os01g05960
Os.32822.1.S1_at--719--7391Chr01:2840124..2840148 (25 bp)
GTGAGGTCCACATGTAGAGTTGATG
LOC_Os01g05960
Os.32822.1.S1_at--330--9791Chr01:2840198..2840222 (25 bp)
TAAGCTTAGATGCATGTCAGTGTAA
LOC_Os01g05960
Os.32822.1.S1_at--500--6011Chr01:2840271..2840295 (25 bp)
GAGAGTTTTGGCTTCTTACACAATG
LOC_Os01g05960
Target Sequence 
AGTCTCCAGACTAGGTGATATTTACAGCTTAGGCATATTATTGCTTGAGATATTTACCGGAAGGAGCCCTACTGATGACA
TGTTCAAGGATTCGGTGGATCTGCACAAATTTGCATCAGCAGCATTTCCTGGCCGAGTCCTAGATATAGCTGATCGAACA
ATCTGGCTACATGAAGAAGCAAAAAATAAAGATATAACAGATGCAAGCATAACACGAAGTATTGTTCAAGACTGCTTGGT
TTCTGTCCTTAGACTTGGCATATCCTGCTCAAAGCAACAAGCCAAAGATCGAATGTTGTTAGCAGATGCTGTGTCAAAGA
TGCATGCAATCAGAGATGAATATCTTCTGTCTCAGGTGGTTAAGAAATGAACAGTAAAGTACTTGAGCTAAATGTTGGGT
GAGGACGTGAGGTCCACATGTAGAGTTGATGATTGCATTGGGAAATAATCAGAGGTACACAAGGTGTTATAGCATTATAT
TAAGCTTAGATGCATGTCAGTGTAAGAGATGCATACAGAATGCAATAATGTTGATTGCACGATGTAGAAGTACGAGAGTT
TTGGCTTCTTACACAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis