Browse Element(s) Details


OsAffx.22770.1.S1_x_at

Description gb:NM_184406.1
DB_XREF= gi:34895901
GEN=P0009G03.32
TID=OsAffx.22770.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative protein kinase Xa21 (P0009G03.32), mRNA.
PROD=putative protein kinase Xa21
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0598011/11Leucine Rich Repeat family protein, expressed
LOC_Os01g056402/11Leucine Rich Repeat family protein
LOC_Os01g059401/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05930Os.45357.1.S1_at11/111+2822918..2825732SWIM zinc finger family protein, expressed
LOC_Os01g05940OsAffx.22770.2.S1_x_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.4.S1_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.3.S1_x_at2/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.1.S1_x_at1/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05950Os.19803.2.S1_at11/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05950OsAffx.10929.1.S1_x_at6/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05960Os.32822.1.S1_at11/111+2836736..2840314Leucine Rich Repeat family protein, expressed
LOC_Os01g05970OsAffx.10929.1.S1_x_at11/111+2841231..2845914Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os01g05980OsAffx.22770.1.S1_x_at11/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05980OsAffx.22770.3.S1_x_at1/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05990Os.19803.3.S1_at11/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g05990OsAffx.10929.1.S1_x_at7/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g06000OsAffx.10931.1.S1_at11/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.10931.3.S1_at2/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.24723.1.S1_at1/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06010Os.47037.1.S1_at11/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06010OsAffx.10929.1.S1_x_at6/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06020Os.24869.1.A1_at9/111+2874449..2879488Aspartyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22770.1.S1_x_at--285--1251Chr01:2851294..2851318 (25 bp)
AGTTGTCAGCCACCGATCATTCATT
LOC_Os01g05980
OsAffx.22770.1.S1_x_at--599--3572Chr01:2851383..2851407 (25 bp)
CATATCAAAAATCCTCCCCAAAAGC
LOC_Os01g05980
OsAffx.22770.1.S1_x_at--801--4351Chr01:2851645..2851669 (25 bp)
CCAGAGCAGGTGATACTTACAGCTT
LOC_Os01g05980
OsAffx.22770.1.S1_x_at--181--1451Chr01:2851701..2851725 (25 bp)
AGAAGTCCCACTGATGACATTTTCA
LOC_Os01g05980
OsAffx.22770.1.S1_x_at--418--7673Chr01:2851726..2851750 (25 bp)
GGGATTCAATGGATCTGCACAAGTT
LOC_Os01g05980
OsAffx.22770.1.S1_x_at--396--5132Chr01:2851742..2851766 (25 bp)
GCACAAGTTTGTTGCAGCTTCTTTT
LOC_Os01g05980
OsAffx.22770.1.S1_x_at--957--5051Chr01:2851755..2851779 (25 bp)
GCAGCTTCTTTTCTTGAGAGCGCCA
LOC_Os01g05980
OsAffx.22770.1.S1_x_at--64--6011Chr01:2851770..2851794 (25 bp)
GAGAGCGCCATGAACATAGCTGATC
LOC_Os01g05980
OsAffx.22770.1.S1_x_at--679--4031Chr01:2851883..2851907 (25 bp)
CGTTCTTAGGCTCGGCTTATCCTGC
LOC_Os01g05980
OsAffx.22770.1.S1_x_at--255--2351Chr01:2851910..2851934 (25 bp)
AAAGCAACAACCCAGAGACCGAATG
LOC_Os01g05980
OsAffx.22770.1.S1_x_at--1095--5811Chr01:2851926..2851950 (25 bp)
GACCGAATGCTGTTACCAGATGCTG
LOC_Os01g05980
Target Sequence 
AGTTGTCAGCCACCGATCATTCATTGTGACCTGAAACCAAGTAATATTCTTCTTGCAGAAGACATGAGTGCAAAGGTTGG
AGATTTTGGCATATCAAAAATCCTCCCCAAAAGCACAACTAGAACTCTTCAATATTCAAAAAGCTCAATTGGAATCCGAG
GTTCCATTGGATATATTGCACCAGAGTATGGAGAAGGTTCTGCAGTAACCAGAGCAGGTGATACTTACAGCTTAGGTATA
TTGTTGCTTGAGATGTTTAATGGAAGAAGTCCCACTGATGACATTTTCAGGGATTCAATGGATCTGCACAAGTTTGTTGC
AGCTTCTTTTCTTGAGAGCGCCATGAACATAGCTGATCGAACAATCTGGCTGCATGAAGAAGCAAATGATACAGATGGGA
CAAATGCAAGCACAAAAAGAAGAATTATTCAACAGTGTTTGGTGTCCGTTCTTAGGCTCGGCTTATCCTGCTCAAAGCAA
CAACCCAGAGACCGAATGCTGTTACCAGATGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22770.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis