Browse Element(s) Details


Os.24869.1.A1_at

Description gb:AK059454.1
DB_XREF= gi:32969472
TID=Os.24869.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24869 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative aspartate--tRNA ligase (P0030H07.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B12, full insert sequence.
FL= gb:AK059454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g060209/11Aspartyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05980OsAffx.22770.1.S1_x_at11/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05980OsAffx.22770.3.S1_x_at1/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05990Os.19803.3.S1_at11/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g05990OsAffx.10929.1.S1_x_at7/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g06000OsAffx.10931.1.S1_at11/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.10931.3.S1_at2/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.24723.1.S1_at1/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06010Os.47037.1.S1_at11/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06010OsAffx.10929.1.S1_x_at6/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06020Os.24869.1.A1_at9/111+2874449..2879488Aspartyl-tRNA synthetase, putative, expressed
LOC_Os01g06030OsAffx.23131.2.S1_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06030OsAffx.23131.2.S1_x_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06040OsAffx.10932.1.S1_at11/111+2883862..2885236hypothetical protein
LOC_Os01g06050Os.54577.1.S1_at11/111+2889722..2891509expressed protein
LOC_Os01g06060Os.1899.1.S1_at9/111+2893487..2894867PrMC3, putative, expressed
LOC_Os01g06070OsAffx.23131.1.S1_at11/111+2895840..2896698hypothetical protein
LOC_Os01g06070OsAffx.23131.2.S1_x_at1/111+2895840..2896698hypothetical protein
LOC_Os01g06080OsAffx.10933.1.S1_s_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06080Os.55760.1.S1_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06090OsAffx.23132.1.S1_at11/111+2903854..2904722expressed protein
LOC_Os01g06090OsAffx.10933.1.S1_s_at2/111+2903854..2904722expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0005737cellular_componentcytoplasm
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24869.1.A1_at--68--7871NONE
GGTATCTCACCCGAGCAGGCAGAGG
NONE
Os.24869.1.A1_at--372--5271Chr01:2878559..2878583 (25 bp)
GAATGTTTTGACATGGGTGCTCCTC
LOC_Os01g06020
Os.24869.1.A1_at--644--1271Chr01:2879002..2879026 (25 bp)
AGATCGTTTGGTGATGCTTTTGGCT
LOC_Os01g06020
Os.24869.1.A1_at--967--551Chr01:2879039..2879063 (25 bp)
ATCCGGGATGTGATTGCTTTCCCAA
LOC_Os01g06020
Os.24869.1.A1_at--1020--4871Chr01:2879054..2879078 (25 bp)
GCTTTCCCAAAGACTACAACTGCTC
LOC_Os01g06020
Os.24869.1.A1_at--126--1991Chr01:2879072..2879096 (25 bp)
ACTGCTCAATGTTCACTCACCAAAG
LOC_Os01g06020
Os.24869.1.A1_at--747--411Chr01:2879130..2879154 (25 bp)
ATCTTGGCTTCCGTACGTGAAGTGA
LOC_Os01g06020
Os.24869.1.A1_at--352--1751Chr01:2879236..2879260 (25 bp)
ACCTTTTGCGAATGTGCTTCTGCTC
LOC_Os01g06020
Os.24869.1.A1_at--15--3511Chr01:2879276..2879300 (25 bp)
CATGGATAGGCTGGTTGTCCATCTC
LOC_Os01g06020
Os.24869.1.A1_at--1065--2851Chr01:2879364..2879388 (25 bp)
AAGTGCCCAAGCTATTTGGCTGTTG
LOC_Os01g06020
Os.24869.1.A1_at--734--6931NONE
GTAGGTGCTGTTCGTTGTTTATAAA
NONE
Target Sequence 
GGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGG
AATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGA
CTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTNGATCCACAGCAATTGAAGGATCTTGGCTTCCGTACG
TGAAGTGAGTGCACTGNTTGTAACAAGGTTTGAGTTATATAGGAACATCCNTTGTNTACACCGGGNACCCAACCTGTCNC
ANNNNNNNNGCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATC
TCNTNANNNNNNTNAAANNNNNNAANNTTNGTCGTGACTATTGTNGGATAGCTTGTCAAGTGCCCAAGCTATTTGGCTGT
TGAGTTACNCTGATAAACAGTAGAAAAAATTGGATGAGGCAATTAAAAANAANTTGAGTAAAAAAAAGTTGTAGGTGCTG
TTCGTTGTTTATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24869.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis